Taxus chinensis (taxus_chinensis)
Imported from atlas release summary for Taxus chinensis.
2956
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2956
Candidate Genes
C3'H/CYP98A
7.14%
C4H
6.91%
CYP76
5.33%
IFS
4.85%
BAHD
4.84%
UGT
3.95%
T3O
3.49%
7DLGT
3.24%
Other Families
60.25%
More Families (97)
DWF4/CYP90B1
255
3.07%
UFGT
248
2.99%
4CL
222
2.67%
POD
220
2.65%
F3H
209
2.52%
H6H
175
2.11%
BR6OX2/CYP85A2
168
2.02%
F3'H/CYP75B
161
1.94%
HCT
157
1.89%
CAS
139
1.67%
T16H
118
1.42%
CODM/T6ODM
117
1.41%
NMT
115
1.38%
IFR
115
1.38%
RAS
108
1.3%
G8O/G8H
107
1.29%
PMT
104
1.25%
TRI/TRII
97
1.17%
IO
91
1.1%
LAC
89
1.07%
CAD
86
1.04%
STR
83
1.0%
CYP90D1
82
0.99%
F3'5'H/CYP75A
78
0.94%
TPS
78
0.94%
SGD
74
0.89%
BR6OX1/CYP85A1
67
0.81%
GS
65
0.78%
FNS
63
0.76%
COMT
63
0.76%
ANS/LDOX
59
0.71%
GES
57
0.69%
SMT1/SMT2/SMT3
52
0.63%
F5H/CYP84A
51
0.61%
ANR
50
0.6%
CPD/CYP90A1
50
0.6%
CCR
48
0.58%
COR
47
0.57%
8HGO
46
0.55%
TAT
46
0.55%
7DLH
45
0.54%
PYKS
43
0.52%
BBE
42
0.51%
CSE
41
0.49%
ROT3/CYP90C1
38
0.46%
SLS
35
0.42%
CYP719
35
0.42%
16OMT
33
0.4%
CYP80B1
32
0.39%
DFR
32
0.39%
PAL
30
0.36%
ISY
26
0.31%
CYP71
24
0.29%
NCS
23
0.28%
CYP51G1
17
0.2%
GGPPS
17
0.2%
CHS
13
0.16%
CCoAOMT
13
0.16%
FPPS
13
0.16%
LAMT
12
0.14%
FLS
11
0.13%
SQE
11
0.13%
MPO
10
0.12%
6OMT_4OMT_SOMT
10
0.12%
XMT_MXMT_DXMT
10
0.12%
SQS/FDFT1
10
0.12%
MVK
10
0.12%
ADC
9
0.11%
DWF1
9
0.11%
CPR
8
0.1%
DET2
7
0.08%
CNMT
6
0.07%
SMO1/SMO2
6
0.07%
HMGR
6
0.07%
DXS
6
0.07%
CHI
5
0.06%
MCT/IspD
5
0.06%
TDC
4
0.05%
AACT
4
0.05%
MVD
4
0.05%
ODC
3
0.04%
CYP80F1
3
0.04%
PMK
3
0.04%
TYDC_DDC
2
0.02%
HPPR
2
0.02%
HYD1
2
0.02%
HDR/IspH
2
0.02%
MDS/IspF
2
0.02%
HMGS
2
0.02%
DWF5
1
0.01%
FK
1
0.01%
DWF7
1
0.01%
CPI1
1
0.01%
DXR
1
0.01%
HDS/IspG
1
0.01%
CMK/IspE
1
0.01%
IDI
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 800 | 19 | BAHD (289) | View species results |
| Alkaloid pathway | 738 | 26 | 7DLGT (127) | View species results |
| Phenylpropanoid pathway | 612 | 13 | POD (199) | View species results |
| Flavonoid pathway | 372 | 14 | UFGT (201) | View species results |
| Rosmarinic acid pathway | 258 | 7 | C4H (132) | View species results |
| Steroid pathway | 176 | 15 | CAS (109) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 3760 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 667 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| TchiHiC_scaffold_100052620.1 | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| TchiHiC_scaffold_100057440.1 | Flavonoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| TchiHiC_scaffold_10007960.1 | Flavonoid | 4CL | low | borderline | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |
| TchiHiC_scaffold_10025240.1 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| TchiHiC_scaffold_110082300.1 | Flavonoid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| TchiHiC_scaffold_110084990.1 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| TchiHiC_scaffold_110097870.1 | Flavonoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| TchiHiC_scaffold_110097880.1 | Flavonoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| TchiHiC_scaffold_110097930.1 | Flavonoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| TchiHiC_scaffold_110105670.1 | Flavonoid | 4CL | low | borderline | 4CL__00001__sp_I3PB36_CNL_PETHY |
| TchiHiC_scaffold_110122800.1 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| TchiHiC_scaffold_120129200.1 | Flavonoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| TchiHiC_scaffold_120130970.1 | Flavonoid | 4CL | low | borderline | 4CL__00001__sp_I3PB36_CNL_PETHY |
| TchiHiC_scaffold_120160520.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| TchiHiC_scaffold_120164030.1 | Flavonoid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| TchiHiC_scaffold_20173990.1 | Flavonoid | 4CL | low | borderline | 4CL__00004__sp_O24146_4CL2_TOBAC |
| TchiHiC_scaffold_20180530.1 | Flavonoid | 4CL | low | borderline | 4CL__00011__sp_Q6ZAC1_4CL5_ORYSJ |
| TchiHiC_scaffold_20180560.1 | Flavonoid | 4CL | low | borderline | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| TchiHiC_scaffold_20197750.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| TchiHiC_scaffold_30207440.1 | Flavonoid | 4CL | medium | pass | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |
| TchiHiC_scaffold_40224860.1 | Flavonoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| TchiHiC_scaffold_40229750.1 | Flavonoid | 4CL | low | borderline | 4CL__00007__sp_Q42524_4CL1_ARATH |
| TchiHiC_scaffold_40230300.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| TchiHiC_scaffold_40230320.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| TchiHiC_scaffold_40230330.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| TchiHiC_scaffold_40234480.1 | Flavonoid | 4CL | low | borderline | 4CL__00001__sp_I3PB36_CNL_PETHY |
| TchiHiC_scaffold_40234520.1 | Flavonoid | 4CL | low | borderline | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| TchiHiC_scaffold_40244840.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| TchiHiC_scaffold_50268350.1 | Flavonoid | 4CL | low | borderline | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |
| TchiHiC_scaffold_50275740.1 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| TchiHiC_scaffold_50275770.1 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| TchiHiC_scaffold_50275780.1 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| TchiHiC_scaffold_50276160.1 | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| TchiHiC_scaffold_50283010.1 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| TchiHiC_scaffold_50283060.1 | Flavonoid | 4CL | low | borderline | 4CL__00008__sp_Q42982_4CL2_ORYSJ |
| TchiHiC_scaffold_60295200.1 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| TchiHiC_scaffold_60295990.1 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| TchiHiC_scaffold_60296540.1 | Flavonoid | 4CL | medium | pass | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |
| TchiHiC_scaffold_60317180.1 | Flavonoid | 4CL | low | borderline | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |
| TchiHiC_scaffold_60322020.1 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| TchiHiC_scaffold_70334240.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| TchiHiC_scaffold_70347530.1 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| TchiHiC_scaffold_70347540.1 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| TchiHiC_scaffold_70348620.1 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| TchiHiC_scaffold_70348700.1 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| TchiHiC_scaffold_70348780.1 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| TchiHiC_scaffold_70348790.1 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| TchiHiC_scaffold_70348840.1 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| TchiHiC_scaffold_70348880.1 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| TchiHiC_scaffold_70353950.1 | Flavonoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |