PlantSME Plant secondary metabolism enzyme database

Taxus chinensis (taxus_chinensis)

Imported from atlas release summary for Taxus chinensis.

2956
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 800 19 BAHD (289) View species results
Alkaloid pathway 738 26 7DLGT (127) View species results
Phenylpropanoid pathway 612 13 POD (199) View species results
Flavonoid pathway 372 14 UFGT (201) View species results
Rosmarinic acid pathway 258 7 C4H (132) View species results
Steroid pathway 176 15 CAS (109) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3760 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 667 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CODM/T6ODM
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Gene Pathway Family Confidence Status
TchiHiC_scaffold_100049730.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_100055080.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_10005710.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_100058770.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_100069730.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_100071240.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_100073110.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_100073140.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_100078880.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_10013330.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_10013360.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_10013390.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_10016030.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_10016770.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_10016780.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_10016840.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_10016890.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_10016940.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_10016950.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_10023880.1 Alkaloid CODM/T6ODM low borderline
TchiHiC_scaffold_10023910.1 Alkaloid CODM/T6ODM low borderline
TchiHiC_scaffold_10039810.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_10042810.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_10042820.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_110095790.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_110119090.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_110119110.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_110119120.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_110119140.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_110119250.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_110119410.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_120133600.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_120152730.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_120152750.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_120152790.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_120164830.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_20188010.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_20189810.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_20189820.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_20189860.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_20196750.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_30215920.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_30219600.1 Alkaloid CODM/T6ODM low borderline
TchiHiC_scaffold_30220140.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_30221550.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_30221560.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_40225020.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_40225950.1 Alkaloid CODM/T6ODM medium borderline
TchiHiC_scaffold_40225970.1 Alkaloid CODM/T6ODM low borderline
TchiHiC_scaffold_40228280.1 Alkaloid CODM/T6ODM medium borderline