PlantSME Plant secondary metabolism enzyme database

Taxus chinensis (taxus_chinensis)

Imported from atlas release summary for Taxus chinensis.

2956
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 800 19 BAHD (289) View species results
Alkaloid pathway 738 26 7DLGT (127) View species results
Phenylpropanoid pathway 612 13 POD (199) View species results
Flavonoid pathway 372 14 UFGT (201) View species results
Rosmarinic acid pathway 258 7 C4H (132) View species results
Steroid pathway 176 15 CAS (109) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3760 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 667 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BBE
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Gene Pathway Family Confidence Status
TchiHiC_scaffold_100063940.1 Alkaloid BBE low borderline
TchiHiC_scaffold_100063960.1 Alkaloid BBE low borderline
TchiHiC_scaffold_100078990.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_10035320.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_120135620.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_120135660.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_120135670.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_120146710.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_20203800.1 Alkaloid BBE low borderline
TchiHiC_scaffold_40232210.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_40232220.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_40232230.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_40232240.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_40232270.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_40232280.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_40232290.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_40232300.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_40243390.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_40243400.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_40243410.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_40243420.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_40243450.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_40243460.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_40243470.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_40243480.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_40243490.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_40243520.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_40243530.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_40243540.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_40243550.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_40243560.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_40243570.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_40243580.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_40243590.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_40243600.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_40243710.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_40243730.1 Alkaloid BBE low borderline
TchiHiC_scaffold_40243740.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_40243750.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_60296850.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_60306340.1 Alkaloid BBE medium borderline
TchiHiC_scaffold_80379740.1 Alkaloid BBE medium borderline