PlantSME Plant secondary metabolism enzyme database

Taxus chinensis (taxus_chinensis)

Imported from atlas release summary for Taxus chinensis.

2956
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 800 19 BAHD (289) View species results
Alkaloid pathway 738 26 7DLGT (127) View species results
Phenylpropanoid pathway 612 13 POD (199) View species results
Flavonoid pathway 372 14 UFGT (201) View species results
Rosmarinic acid pathway 258 7 C4H (132) View species results
Steroid pathway 176 15 CAS (109) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3760 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 667 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SLS
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Gene Pathway Family Confidence Status
TchiHiC_scaffold_10005330.1 Alkaloid SLS medium borderline
TchiHiC_scaffold_100071350.1 Alkaloid SLS medium borderline
TchiHiC_scaffold_100071830.1 Alkaloid SLS medium borderline
TchiHiC_scaffold_100072980.1 Alkaloid SLS medium borderline
TchiHiC_scaffold_100075130.1 Alkaloid SLS medium borderline
TchiHiC_scaffold_100075140.1 Alkaloid SLS medium borderline
TchiHiC_scaffold_100075150.1 Alkaloid SLS medium borderline
TchiHiC_scaffold_110108550.1 Alkaloid SLS medium borderline
TchiHiC_scaffold_110114340.1 Alkaloid SLS medium borderline
TchiHiC_scaffold_110119600.1 Alkaloid SLS medium borderline
TchiHiC_scaffold_120134350.1 Alkaloid SLS medium borderline
TchiHiC_scaffold_120135240.1 Alkaloid SLS medium borderline
TchiHiC_scaffold_20183360.1 Alkaloid SLS medium borderline
TchiHiC_scaffold_20184790.1 Alkaloid SLS medium borderline
TchiHiC_scaffold_20184810.1 Alkaloid SLS medium borderline
TchiHiC_scaffold_20184830.1 Alkaloid SLS medium borderline
TchiHiC_scaffold_20184840.1 Alkaloid SLS medium borderline
TchiHiC_scaffold_20193730.1 Alkaloid SLS medium borderline
TchiHiC_scaffold_30220730.1 Alkaloid SLS low borderline
TchiHiC_scaffold_40246690.1 Alkaloid SLS medium borderline
TchiHiC_scaffold_50270000.1 Alkaloid SLS medium borderline
TchiHiC_scaffold_50270010.1 Alkaloid SLS medium borderline
TchiHiC_scaffold_50270020.1 Alkaloid SLS medium borderline
TchiHiC_scaffold_60299860.1 Alkaloid SLS medium borderline
TchiHiC_scaffold_60299950.1 Alkaloid SLS medium borderline
TchiHiC_scaffold_60299970.1 Alkaloid SLS medium borderline
TchiHiC_scaffold_70340270.1 Alkaloid SLS low borderline
TchiHiC_scaffold_80366440.1 Alkaloid SLS medium borderline
TchiHiC_scaffold_80386570.1 Alkaloid SLS medium borderline
TchiHiC_scaffold_80391520.1 Alkaloid SLS medium borderline
TchiHiC_scaffold_90417080.1 Alkaloid SLS low borderline
TchiHiC_scaffold_90417460.1 Alkaloid SLS low borderline
TchiHiC_scaffold_90417500.1 Alkaloid SLS low borderline
TchiHiC_scaffold_90417750.1 Alkaloid SLS low borderline
TchiHiC_scaffold_90430310.1 Alkaloid SLS medium borderline