PlantSME Plant secondary metabolism enzyme database

Taxus chinensis (taxus_chinensis)

Imported from atlas release summary for Taxus chinensis.

2956
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 800 19 BAHD (289) View species results
Alkaloid pathway 738 26 7DLGT (127) View species results
Phenylpropanoid pathway 612 13 POD (199) View species results
Flavonoid pathway 372 14 UFGT (201) View species results
Rosmarinic acid pathway 258 7 C4H (132) View species results
Steroid pathway 176 15 CAS (109) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3760 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 667 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ROT3/CYP90C1
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Gene Pathway Family Confidence Status
TchiHiC_scaffold_100043810.1 Steroid ROT3/CYP90C1 medium borderline
TchiHiC_scaffold_100052150.1 Steroid ROT3/CYP90C1 medium borderline
TchiHiC_scaffold_100059630.1 Steroid ROT3/CYP90C1 medium borderline
TchiHiC_scaffold_10007180.1 Steroid ROT3/CYP90C1 medium borderline
TchiHiC_scaffold_10007190.1 Steroid ROT3/CYP90C1 medium pass
TchiHiC_scaffold_100072010.1 Steroid ROT3/CYP90C1 medium borderline
TchiHiC_scaffold_100072110.1 Steroid ROT3/CYP90C1 medium borderline
TchiHiC_scaffold_10031210.1 Steroid ROT3/CYP90C1 medium borderline
TchiHiC_scaffold_10043030.1 Steroid ROT3/CYP90C1 medium pass
TchiHiC_scaffold_110095760.1 Steroid ROT3/CYP90C1 medium pass
TchiHiC_scaffold_110099770.1 Steroid ROT3/CYP90C1 low borderline
TchiHiC_scaffold_120134130.1 Steroid ROT3/CYP90C1 medium pass
TchiHiC_scaffold_120134200.1 Steroid ROT3/CYP90C1 low borderline
TchiHiC_scaffold_120153920.1 Steroid ROT3/CYP90C1 medium borderline
TchiHiC_scaffold_20179480.1 Steroid ROT3/CYP90C1 medium pass
TchiHiC_scaffold_20201140.1 Steroid ROT3/CYP90C1 medium borderline
TchiHiC_scaffold_30211270.1 Steroid ROT3/CYP90C1 low borderline
TchiHiC_scaffold_40240330.1 Steroid ROT3/CYP90C1 medium borderline
TchiHiC_scaffold_40253140.1 Steroid ROT3/CYP90C1 low borderline
TchiHiC_scaffold_40259570.1 Steroid ROT3/CYP90C1 medium borderline
TchiHiC_scaffold_50269280.1 Steroid ROT3/CYP90C1 medium borderline
TchiHiC_scaffold_50278970.1 Steroid ROT3/CYP90C1 medium borderline
TchiHiC_scaffold_50284340.1 Steroid ROT3/CYP90C1 low borderline
TchiHiC_scaffold_50284730.1 Steroid ROT3/CYP90C1 low borderline
TchiHiC_scaffold_60297960.1 Steroid ROT3/CYP90C1 medium borderline
TchiHiC_scaffold_60310480.1 Steroid ROT3/CYP90C1 medium borderline
TchiHiC_scaffold_60311020.1 Steroid ROT3/CYP90C1 medium borderline
TchiHiC_scaffold_70338010.1 Steroid ROT3/CYP90C1 low borderline
TchiHiC_scaffold_70341050.1 Steroid ROT3/CYP90C1 low borderline
TchiHiC_scaffold_70353010.1 Steroid ROT3/CYP90C1 low borderline
TchiHiC_scaffold_70359290.1 Steroid ROT3/CYP90C1 medium borderline
TchiHiC_scaffold_70364070.1 Steroid ROT3/CYP90C1 medium borderline
TchiHiC_scaffold_80368780.1 Steroid ROT3/CYP90C1 medium borderline
TchiHiC_scaffold_90405530.1 Steroid ROT3/CYP90C1 low borderline
TchiHiC_scaffold_90414830.1 Steroid ROT3/CYP90C1 medium borderline
TchiHiC_scaffold_90433340.1 Steroid ROT3/CYP90C1 medium borderline
TchiHiC_scaffold_90435090.1 Steroid ROT3/CYP90C1 medium borderline
TchiHiC_scaffold_90435110.1 Steroid ROT3/CYP90C1 medium borderline