PlantSME Plant secondary metabolism enzyme database

Taxus chinensis (taxus_chinensis)

Imported from atlas release summary for Taxus chinensis.

2956
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 800 19 BAHD (289) View species results
Alkaloid pathway 738 26 7DLGT (127) View species results
Phenylpropanoid pathway 612 13 POD (199) View species results
Flavonoid pathway 372 14 UFGT (201) View species results
Rosmarinic acid pathway 258 7 C4H (132) View species results
Steroid pathway 176 15 CAS (109) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3760 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 667 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP80B1
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Gene Pathway Family Confidence Status
TchiHiC_scaffold_10005690.1 Alkaloid CYP80B1 medium borderline
TchiHiC_scaffold_10005720.1 Alkaloid CYP80B1 medium borderline
TchiHiC_scaffold_100070980.1 Alkaloid CYP80B1 medium borderline
TchiHiC_scaffold_10007110.1 Alkaloid CYP80B1 low borderline
TchiHiC_scaffold_10007120.1 Alkaloid CYP80B1 low borderline
TchiHiC_scaffold_10014130.1 Alkaloid CYP80B1 low borderline
TchiHiC_scaffold_10017060.1 Alkaloid CYP80B1 medium borderline
TchiHiC_scaffold_10019440.1 Alkaloid CYP80B1 low borderline
TchiHiC_scaffold_10022540.1 Alkaloid CYP80B1 low borderline
TchiHiC_scaffold_10035090.1 Alkaloid CYP80B1 low borderline
TchiHiC_scaffold_10035100.1 Alkaloid CYP80B1 medium pass
TchiHiC_scaffold_110106200.1 Alkaloid CYP80B1 medium borderline
TchiHiC_scaffold_120128750.1 Alkaloid CYP80B1 medium borderline
TchiHiC_scaffold_120143980.1 Alkaloid CYP80B1 low borderline
TchiHiC_scaffold_120149960.1 Alkaloid CYP80B1 medium borderline
TchiHiC_scaffold_120160770.1 Alkaloid CYP80B1 medium borderline
TchiHiC_scaffold_20182050.1 Alkaloid CYP80B1 low borderline
TchiHiC_scaffold_20197890.1 Alkaloid CYP80B1 medium borderline
TchiHiC_scaffold_20203240.1 Alkaloid CYP80B1 medium borderline
TchiHiC_scaffold_30214630.1 Alkaloid CYP80B1 medium borderline
TchiHiC_scaffold_40227580.1 Alkaloid CYP80B1 low borderline
TchiHiC_scaffold_40234690.1 Alkaloid CYP80B1 low borderline
TchiHiC_scaffold_40254830.1 Alkaloid CYP80B1 low borderline
TchiHiC_scaffold_40254840.1 Alkaloid CYP80B1 low borderline
TchiHiC_scaffold_40256740.1 Alkaloid CYP80B1 medium pass
TchiHiC_scaffold_50264810.1 Alkaloid CYP80B1 medium borderline
TchiHiC_scaffold_50278970.1 Alkaloid CYP80B1 medium borderline
TchiHiC_scaffold_50286850.1 Alkaloid CYP80B1 low borderline
TchiHiC_scaffold_60315900.1 Alkaloid CYP80B1 low borderline
TchiHiC_scaffold_60320820.1 Alkaloid CYP80B1 medium borderline
TchiHiC_scaffold_80392570.1 Alkaloid CYP80B1 medium borderline
TchiHiC_scaffold_80394700.1 Alkaloid CYP80B1 medium borderline