PlantSME Plant secondary metabolism enzyme database

Taxus chinensis (taxus_chinensis)

Imported from atlas release summary for Taxus chinensis.

2956
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 800 19 BAHD (289) View species results
Alkaloid pathway 738 26 7DLGT (127) View species results
Phenylpropanoid pathway 612 13 POD (199) View species results
Flavonoid pathway 372 14 UFGT (201) View species results
Rosmarinic acid pathway 258 7 C4H (132) View species results
Steroid pathway 176 15 CAS (109) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3760 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 667 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ANR
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Gene Pathway Family Confidence Status
TchiHiC_scaffold_100048560.1 Flavonoid ANR medium pass
TchiHiC_scaffold_100051820.1 Flavonoid ANR low borderline
TchiHiC_scaffold_100070030.1 Flavonoid ANR medium pass
TchiHiC_scaffold_10028960.1 Flavonoid ANR low borderline
TchiHiC_scaffold_10030640.1 Flavonoid ANR low borderline
TchiHiC_scaffold_10030730.1 Flavonoid ANR medium borderline
TchiHiC_scaffold_110102340.1 Flavonoid ANR medium borderline
TchiHiC_scaffold_120124500.1 Flavonoid ANR low borderline
TchiHiC_scaffold_120132460.1 Flavonoid ANR low borderline
TchiHiC_scaffold_120133110.1 Flavonoid ANR medium borderline
TchiHiC_scaffold_120145550.1 Flavonoid ANR low borderline
TchiHiC_scaffold_120149220.1 Flavonoid ANR low borderline
TchiHiC_scaffold_20176760.1 Flavonoid ANR low borderline
TchiHiC_scaffold_20183140.1 Flavonoid ANR low borderline
TchiHiC_scaffold_30209010.1 Flavonoid ANR medium borderline
TchiHiC_scaffold_30209150.1 Flavonoid ANR medium borderline
TchiHiC_scaffold_30209170.1 Flavonoid ANR medium borderline
TchiHiC_scaffold_30210220.1 Flavonoid ANR medium borderline
TchiHiC_scaffold_30210230.1 Flavonoid ANR medium borderline
TchiHiC_scaffold_40246770.1 Flavonoid ANR medium borderline
TchiHiC_scaffold_40246810.1 Flavonoid ANR medium borderline
TchiHiC_scaffold_50271420.1 Flavonoid ANR medium pass
TchiHiC_scaffold_50283030.1 Flavonoid ANR low borderline
TchiHiC_scaffold_50283080.1 Flavonoid ANR low borderline
TchiHiC_scaffold_50289060.1 Flavonoid ANR medium borderline
TchiHiC_scaffold_50289950.1 Flavonoid ANR medium borderline
TchiHiC_scaffold_60318910.1 Flavonoid ANR medium borderline
TchiHiC_scaffold_60318950.1 Flavonoid ANR medium borderline
TchiHiC_scaffold_60319060.1 Flavonoid ANR medium borderline
TchiHiC_scaffold_60327230.1 Flavonoid ANR low borderline
TchiHiC_scaffold_70335270.1 Flavonoid ANR low borderline
TchiHiC_scaffold_70342270.1 Flavonoid ANR medium borderline
TchiHiC_scaffold_70342290.1 Flavonoid ANR medium borderline
TchiHiC_scaffold_70343420.1 Flavonoid ANR medium borderline
TchiHiC_scaffold_70343440.1 Flavonoid ANR medium borderline
TchiHiC_scaffold_70343500.1 Flavonoid ANR medium borderline
TchiHiC_scaffold_70347150.1 Flavonoid ANR low borderline
TchiHiC_scaffold_70347180.1 Flavonoid ANR low borderline
TchiHiC_scaffold_70347550.1 Flavonoid ANR medium borderline
TchiHiC_scaffold_70347570.1 Flavonoid ANR medium borderline
TchiHiC_scaffold_70347600.1 Flavonoid ANR medium borderline
TchiHiC_scaffold_70347850.1 Flavonoid ANR medium borderline
TchiHiC_scaffold_80370480.1 Flavonoid ANR low borderline
TchiHiC_scaffold_80371080.1 Flavonoid ANR low borderline
TchiHiC_scaffold_80372840.1 Flavonoid ANR low borderline
TchiHiC_scaffold_80377610.1 Flavonoid ANR medium borderline
TchiHiC_scaffold_80377730.1 Flavonoid ANR medium borderline
TchiHiC_scaffold_80377810.1 Flavonoid ANR medium borderline
TchiHiC_scaffold_80378750.1 Flavonoid ANR medium borderline
TchiHiC_scaffold_90433590.1 Flavonoid ANR medium borderline