PlantSME Plant secondary metabolism enzyme database

Taxus chinensis (taxus_chinensis)

Imported from atlas release summary for Taxus chinensis.

2956
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Current group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.06% Alkaloid pathway 24.97% Phenylpropanoid pathway 20.7% Flavonoid pathway 12.58% Rosmarinic acid pathway 8.73% Steroid pathway 5.95%
Family Distribution
C3'H/CYP98A 7.14% C4H 6.91% CYP76 5.33% IFS 4.85% BAHD 4.84% UGT 3.95% T3O 3.49% 7DLGT 3.24%
Other Families 60.25%
More Families (97)
DWF4/CYP90B1 255 3.07% UFGT 248 2.99% 4CL 222 2.67% POD 220 2.65% F3H 209 2.52% H6H 175 2.11% BR6OX2/CYP85A2 168 2.02% F3'H/CYP75B 161 1.94% HCT 157 1.89% CAS 139 1.67% T16H 118 1.42% CODM/T6ODM 117 1.41% NMT 115 1.38% IFR 115 1.38% RAS 108 1.3% G8O/G8H 107 1.29% PMT 104 1.25% TRI/TRII 97 1.17% IO 91 1.1% LAC 89 1.07% CAD 86 1.04% STR 83 1.0% CYP90D1 82 0.99% F3'5'H/CYP75A 78 0.94% TPS 78 0.94% SGD 74 0.89% BR6OX1/CYP85A1 67 0.81% GS 65 0.78% FNS 63 0.76% COMT 63 0.76% ANS/LDOX 59 0.71% GES 57 0.69% SMT1/SMT2/SMT3 52 0.63% F5H/CYP84A 51 0.61% ANR 50 0.6% CPD/CYP90A1 50 0.6% CCR 48 0.58% COR 47 0.57% 8HGO 46 0.55% TAT 46 0.55% 7DLH 45 0.54% PYKS 43 0.52% BBE 42 0.51% CSE 41 0.49% ROT3/CYP90C1 38 0.46% SLS 35 0.42% CYP719 35 0.42% 16OMT 33 0.4% CYP80B1 32 0.39% DFR 32 0.39% PAL 30 0.36% ISY 26 0.31% CYP71 24 0.29% NCS 23 0.28% CYP51G1 17 0.2% GGPPS 17 0.2% CHS 13 0.16% CCoAOMT 13 0.16% FPPS 13 0.16% LAMT 12 0.14% FLS 11 0.13% SQE 11 0.13% MPO 10 0.12% 6OMT_4OMT_SOMT 10 0.12% XMT_MXMT_DXMT 10 0.12% SQS/FDFT1 10 0.12% MVK 10 0.12% ADC 9 0.11% DWF1 9 0.11% CPR 8 0.1% DET2 7 0.08% CNMT 6 0.07% SMO1/SMO2 6 0.07% HMGR 6 0.07% DXS 6 0.07% CHI 5 0.06% MCT/IspD 5 0.06% TDC 4 0.05% AACT 4 0.05% MVD 4 0.05% ODC 3 0.04% CYP80F1 3 0.04% PMK 3 0.04% TYDC_DDC 2 0.02% HPPR 2 0.02% HYD1 2 0.02% HDR/IspH 2 0.02% MDS/IspF 2 0.02% HMGS 2 0.02% DWF5 1 0.01% FK 1 0.01% DWF7 1 0.01% CPI1 1 0.01% DXR 1 0.01% HDS/IspG 1 0.01% CMK/IspE 1 0.01% IDI 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 800 19 BAHD (289) View species results
Alkaloid pathway 738 26 7DLGT (127) View species results
Phenylpropanoid pathway 612 13 POD (199) View species results
Flavonoid pathway 372 14 UFGT (201) View species results
Rosmarinic acid pathway 258 7 C4H (132) View species results
Steroid pathway 176 15 CAS (109) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3760 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 667 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SQS/FDFT1
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Gene Pathway Family Confidence Status
TchiHiC_scaffold_10026670.1 Steroid SQS/FDFT1 low borderline
TchiHiC_scaffold_110098130.1 Steroid SQS/FDFT1 low borderline
TchiHiC_scaffold_110105540.1 Steroid SQS/FDFT1 low borderline
TchiHiC_scaffold_120166660.1 Steroid SQS/FDFT1 low borderline
TchiHiC_scaffold_120166680.1 Steroid SQS/FDFT1 low borderline
TchiHiC_scaffold_120166690.1 Steroid SQS/FDFT1 medium pass
TchiHiC_scaffold_120166700.1 Steroid SQS/FDFT1 medium pass
TchiHiC_scaffold_30218420.1 Steroid SQS/FDFT1 low borderline
TchiHiC_scaffold_50276590.1 Steroid SQS/FDFT1 high pass
TchiHiC_scaffold_90406100.1 Steroid SQS/FDFT1 medium pass