PlantSME Plant secondary metabolism enzyme database

Taxus chinensis (taxus_chinensis)

Imported from atlas release summary for Taxus chinensis.

2956
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 800 19 BAHD (289) View species results
Alkaloid pathway 738 26 7DLGT (127) View species results
Phenylpropanoid pathway 612 13 POD (199) View species results
Flavonoid pathway 372 14 UFGT (201) View species results
Rosmarinic acid pathway 258 7 C4H (132) View species results
Steroid pathway 176 15 CAS (109) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3760 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 667 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PAL
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Gene Pathway Family Confidence Status Best Target
TchiHiC_scaffold_100069240.1 Flavonoid PAL low borderline PAL__00006__sp_Q68G84_PAM_TAXCH
TchiHiC_scaffold_120148630.1 Flavonoid PAL low borderline PAL__00006__sp_Q68G84_PAM_TAXCH
TchiHiC_scaffold_120153650.1 Flavonoid PAL medium pass PAL__00007__sp_Q6GZ04_PAM_TAXCA
TchiHiC_scaffold_120161000.1 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
TchiHiC_scaffold_120161010.1 Flavonoid PAL medium pass PAL__00002__sp_P35510_PAL1_ARATH
TchiHiC_scaffold_20184290.1 Flavonoid PAL high pass PAL__00006__sp_Q68G84_PAM_TAXCH
TchiHiC_scaffold_30208460.1 Flavonoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
TchiHiC_scaffold_30209440.1 Flavonoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
TchiHiC_scaffold_40248500.1 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
TchiHiC_scaffold_60303400.1 Flavonoid PAL medium pass PAL__00009__sp_Q9SS45_PAL4_ARATH
TchiHiC_scaffold_100069240.1 Phenylpropanoid PAL low borderline PAL__00006__sp_Q68G84_PAM_TAXCH
TchiHiC_scaffold_120148630.1 Phenylpropanoid PAL low borderline PAL__00006__sp_Q68G84_PAM_TAXCH
TchiHiC_scaffold_120153650.1 Phenylpropanoid PAL medium pass PAL__00007__sp_Q6GZ04_PAM_TAXCA
TchiHiC_scaffold_120161000.1 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
TchiHiC_scaffold_120161010.1 Phenylpropanoid PAL medium pass PAL__00002__sp_P35510_PAL1_ARATH
TchiHiC_scaffold_20184290.1 Phenylpropanoid PAL high pass PAL__00006__sp_Q68G84_PAM_TAXCH
TchiHiC_scaffold_30208460.1 Phenylpropanoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
TchiHiC_scaffold_30209440.1 Phenylpropanoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
TchiHiC_scaffold_40248500.1 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
TchiHiC_scaffold_60303400.1 Phenylpropanoid PAL medium pass PAL__00009__sp_Q9SS45_PAL4_ARATH
TchiHiC_scaffold_100069240.1 Rosmarinic Acid PAL low borderline PAL__00006__sp_Q68G84_PAM_TAXCH
TchiHiC_scaffold_120148630.1 Rosmarinic Acid PAL low borderline PAL__00006__sp_Q68G84_PAM_TAXCH
TchiHiC_scaffold_120153650.1 Rosmarinic Acid PAL medium pass PAL__00007__sp_Q6GZ04_PAM_TAXCA
TchiHiC_scaffold_120161000.1 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
TchiHiC_scaffold_120161010.1 Rosmarinic Acid PAL medium pass PAL__00002__sp_P35510_PAL1_ARATH
TchiHiC_scaffold_20184290.1 Rosmarinic Acid PAL high pass PAL__00006__sp_Q68G84_PAM_TAXCH
TchiHiC_scaffold_30208460.1 Rosmarinic Acid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
TchiHiC_scaffold_30209440.1 Rosmarinic Acid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
TchiHiC_scaffold_40248500.1 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
TchiHiC_scaffold_60303400.1 Rosmarinic Acid PAL medium pass PAL__00009__sp_Q9SS45_PAL4_ARATH