PlantSME Plant secondary metabolism enzyme database

Taxus chinensis (taxus_chinensis)

Imported from atlas release summary for Taxus chinensis.

2956
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 800 19 BAHD (289) View species results
Alkaloid pathway 738 26 7DLGT (127) View species results
Phenylpropanoid pathway 612 13 POD (199) View species results
Flavonoid pathway 372 14 UFGT (201) View species results
Rosmarinic acid pathway 258 7 C4H (132) View species results
Steroid pathway 176 15 CAS (109) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3760 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 667 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DFR
Reset
Gene Pathway Family Confidence Status
TchiHiC_scaffold_100051830.1 Flavonoid DFR medium borderline
TchiHiC_scaffold_100070040.1 Flavonoid DFR medium borderline
TchiHiC_scaffold_10021240.1 Flavonoid DFR medium borderline
TchiHiC_scaffold_10035900.1 Flavonoid DFR medium borderline
TchiHiC_scaffold_10041670.1 Flavonoid DFR medium borderline
TchiHiC_scaffold_120131010.1 Flavonoid DFR medium borderline
TchiHiC_scaffold_120143680.1 Flavonoid DFR low borderline
TchiHiC_scaffold_120148450.1 Flavonoid DFR medium borderline
TchiHiC_scaffold_120156200.1 Flavonoid DFR low borderline
TchiHiC_scaffold_120156220.1 Flavonoid DFR low borderline
TchiHiC_scaffold_120161850.1 Flavonoid DFR medium borderline
TchiHiC_scaffold_20177620.1 Flavonoid DFR medium borderline
TchiHiC_scaffold_20177830.1 Flavonoid DFR medium borderline
TchiHiC_scaffold_40239830.1 Flavonoid DFR medium borderline
TchiHiC_scaffold_40239840.1 Flavonoid DFR medium borderline
TchiHiC_scaffold_40246800.1 Flavonoid DFR medium pass
TchiHiC_scaffold_50289070.1 Flavonoid DFR medium borderline
TchiHiC_scaffold_50289920.1 Flavonoid DFR medium borderline
TchiHiC_scaffold_50289930.1 Flavonoid DFR medium borderline
TchiHiC_scaffold_50289960.1 Flavonoid DFR medium borderline
TchiHiC_scaffold_70332650.1 Flavonoid DFR medium borderline
TchiHiC_scaffold_70342280.1 Flavonoid DFR low borderline
TchiHiC_scaffold_70342310.1 Flavonoid DFR medium borderline
TchiHiC_scaffold_70345850.1 Flavonoid DFR medium borderline
TchiHiC_scaffold_70347560.1 Flavonoid DFR medium borderline
TchiHiC_scaffold_70347840.1 Flavonoid DFR medium borderline
TchiHiC_scaffold_80377710.1 Flavonoid DFR medium borderline
TchiHiC_scaffold_80377910.1 Flavonoid DFR medium borderline
TchiHiC_scaffold_80403010.1 Flavonoid DFR medium borderline
TchiHiC_scaffold_90413120.1 Flavonoid DFR medium borderline
TchiHiC_scaffold_90421760.1 Flavonoid DFR medium borderline
TchiHiC_scaffold_90427170.1 Flavonoid DFR medium borderline