PlantSME Plant secondary metabolism enzyme database

Taxus chinensis (taxus_chinensis)

Imported from atlas release summary for Taxus chinensis.

2956
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 800 19 BAHD (289) View species results
Alkaloid pathway 738 26 7DLGT (127) View species results
Phenylpropanoid pathway 612 13 POD (199) View species results
Flavonoid pathway 372 14 UFGT (201) View species results
Rosmarinic acid pathway 258 7 C4H (132) View species results
Steroid pathway 176 15 CAS (109) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3760 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 667 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP90D1
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Gene Pathway Family Confidence Status
TchiHiC_scaffold_120160510.1 Steroid CYP90D1 medium borderline
TchiHiC_scaffold_120160530.1 Steroid CYP90D1 medium borderline
TchiHiC_scaffold_120163750.1 Steroid CYP90D1 low borderline
TchiHiC_scaffold_120163770.1 Steroid CYP90D1 low borderline
TchiHiC_scaffold_20187480.1 Steroid CYP90D1 medium borderline
TchiHiC_scaffold_20196380.1 Steroid CYP90D1 low borderline
TchiHiC_scaffold_20196420.1 Steroid CYP90D1 low borderline
TchiHiC_scaffold_30213540.1 Steroid CYP90D1 low borderline
TchiHiC_scaffold_30219350.1 Steroid CYP90D1 low borderline
TchiHiC_scaffold_40225810.1 Steroid CYP90D1 medium borderline
TchiHiC_scaffold_40225840.1 Steroid CYP90D1 medium borderline
TchiHiC_scaffold_40225900.1 Steroid CYP90D1 medium borderline
TchiHiC_scaffold_40225910.1 Steroid CYP90D1 medium borderline
TchiHiC_scaffold_40228800.1 Steroid CYP90D1 low borderline
TchiHiC_scaffold_40253120.1 Steroid CYP90D1 low borderline
TchiHiC_scaffold_50268220.1 Steroid CYP90D1 low borderline
TchiHiC_scaffold_50270020.1 Steroid CYP90D1 low borderline
TchiHiC_scaffold_50281410.1 Steroid CYP90D1 medium borderline
TchiHiC_scaffold_50284330.1 Steroid CYP90D1 low borderline
TchiHiC_scaffold_60299950.1 Steroid CYP90D1 low borderline
TchiHiC_scaffold_60311280.1 Steroid CYP90D1 low borderline
TchiHiC_scaffold_60311500.1 Steroid CYP90D1 low borderline
TchiHiC_scaffold_70344740.1 Steroid CYP90D1 low borderline
TchiHiC_scaffold_70347470.1 Steroid CYP90D1 medium borderline
TchiHiC_scaffold_70350160.1 Steroid CYP90D1 medium borderline
TchiHiC_scaffold_70352190.1 Steroid CYP90D1 medium borderline
TchiHiC_scaffold_70352250.1 Steroid CYP90D1 low borderline
TchiHiC_scaffold_70359230.1 Steroid CYP90D1 medium borderline
TchiHiC_scaffold_80391520.1 Steroid CYP90D1 low borderline
TchiHiC_scaffold_90409840.1 Steroid CYP90D1 medium borderline
TchiHiC_scaffold_90410530.1 Steroid CYP90D1 medium borderline
TchiHiC_scaffold_90435120.1 Steroid CYP90D1 medium borderline