PlantSME Plant secondary metabolism enzyme database

Taxus chinensis (taxus_chinensis)

Imported from atlas release summary for Taxus chinensis.

2956
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 800 19 BAHD (289) View species results
Alkaloid pathway 738 26 7DLGT (127) View species results
Phenylpropanoid pathway 612 13 POD (199) View species results
Flavonoid pathway 372 14 UFGT (201) View species results
Rosmarinic acid pathway 258 7 C4H (132) View species results
Steroid pathway 176 15 CAS (109) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3760 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 667 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: G8O/G8H
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Gene Pathway Family Confidence Status
TchiHiC_scaffold_120163760.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_120163910.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_120167030.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_20195710.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_30211930.1 Alkaloid G8O/G8H low borderline
TchiHiC_scaffold_30222670.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_40225810.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_40225840.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_40225910.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_40228380.1 Alkaloid G8O/G8H low borderline
TchiHiC_scaffold_40235120.1 Alkaloid G8O/G8H low borderline
TchiHiC_scaffold_40238170.1 Alkaloid G8O/G8H low borderline
TchiHiC_scaffold_40240870.1 Alkaloid G8O/G8H medium pass
TchiHiC_scaffold_40244990.1 Alkaloid G8O/G8H low borderline
TchiHiC_scaffold_40254850.1 Alkaloid G8O/G8H low borderline
TchiHiC_scaffold_40255990.1 Alkaloid G8O/G8H low borderline
TchiHiC_scaffold_40259520.1 Alkaloid G8O/G8H medium pass
TchiHiC_scaffold_40262960.1 Alkaloid G8O/G8H low borderline
TchiHiC_scaffold_60297120.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_60297190.1 Alkaloid G8O/G8H low borderline
TchiHiC_scaffold_60297200.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_60302270.1 Alkaloid G8O/G8H low borderline
TchiHiC_scaffold_60311110.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_60311470.1 Alkaloid G8O/G8H low borderline
TchiHiC_scaffold_60311520.1 Alkaloid G8O/G8H medium pass
TchiHiC_scaffold_60311560.1 Alkaloid G8O/G8H low borderline
TchiHiC_scaffold_60316590.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_60316630.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_60316710.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_60316730.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_60321560.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_60322730.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_60322880.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_70350500.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_70350540.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_70350550.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_70353040.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_70353250.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_70353260.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_70353270.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_70353670.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_70355810.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_70360580.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_80364330.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_90404120.1 Alkaloid G8O/G8H low borderline
TchiHiC_scaffold_90406690.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_90412050.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_90414290.1 Alkaloid G8O/G8H medium borderline
TchiHiC_scaffold_90414330.1 Alkaloid G8O/G8H medium pass
TchiHiC_scaffold_90415750.1 Alkaloid G8O/G8H medium borderline