PlantSME Plant secondary metabolism enzyme database

Taxus chinensis (taxus_chinensis)

Imported from atlas release summary for Taxus chinensis.

2956
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Current group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.06% Alkaloid pathway 24.97% Phenylpropanoid pathway 20.7% Flavonoid pathway 12.58% Rosmarinic acid pathway 8.73% Steroid pathway 5.95%
Family Distribution
C3'H/CYP98A 7.14% C4H 6.91% CYP76 5.33% IFS 4.85% BAHD 4.84% UGT 3.95% T3O 3.49% 7DLGT 3.24%
Other Families 60.25%
More Families (97)
DWF4/CYP90B1 255 3.07% UFGT 248 2.99% 4CL 222 2.67% POD 220 2.65% F3H 209 2.52% H6H 175 2.11% BR6OX2/CYP85A2 168 2.02% F3'H/CYP75B 161 1.94% HCT 157 1.89% CAS 139 1.67% T16H 118 1.42% CODM/T6ODM 117 1.41% NMT 115 1.38% IFR 115 1.38% RAS 108 1.3% G8O/G8H 107 1.29% PMT 104 1.25% TRI/TRII 97 1.17% IO 91 1.1% LAC 89 1.07% CAD 86 1.04% STR 83 1.0% CYP90D1 82 0.99% F3'5'H/CYP75A 78 0.94% TPS 78 0.94% SGD 74 0.89% BR6OX1/CYP85A1 67 0.81% GS 65 0.78% FNS 63 0.76% COMT 63 0.76% ANS/LDOX 59 0.71% GES 57 0.69% SMT1/SMT2/SMT3 52 0.63% F5H/CYP84A 51 0.61% ANR 50 0.6% CPD/CYP90A1 50 0.6% CCR 48 0.58% COR 47 0.57% 8HGO 46 0.55% TAT 46 0.55% 7DLH 45 0.54% PYKS 43 0.52% BBE 42 0.51% CSE 41 0.49% ROT3/CYP90C1 38 0.46% SLS 35 0.42% CYP719 35 0.42% 16OMT 33 0.4% CYP80B1 32 0.39% DFR 32 0.39% PAL 30 0.36% ISY 26 0.31% CYP71 24 0.29% NCS 23 0.28% CYP51G1 17 0.2% GGPPS 17 0.2% CHS 13 0.16% CCoAOMT 13 0.16% FPPS 13 0.16% LAMT 12 0.14% FLS 11 0.13% SQE 11 0.13% MPO 10 0.12% 6OMT_4OMT_SOMT 10 0.12% XMT_MXMT_DXMT 10 0.12% SQS/FDFT1 10 0.12% MVK 10 0.12% ADC 9 0.11% DWF1 9 0.11% CPR 8 0.1% DET2 7 0.08% CNMT 6 0.07% SMO1/SMO2 6 0.07% HMGR 6 0.07% DXS 6 0.07% CHI 5 0.06% MCT/IspD 5 0.06% TDC 4 0.05% AACT 4 0.05% MVD 4 0.05% ODC 3 0.04% CYP80F1 3 0.04% PMK 3 0.04% TYDC_DDC 2 0.02% HPPR 2 0.02% HYD1 2 0.02% HDR/IspH 2 0.02% MDS/IspF 2 0.02% HMGS 2 0.02% DWF5 1 0.01% FK 1 0.01% DWF7 1 0.01% CPI1 1 0.01% DXR 1 0.01% HDS/IspG 1 0.01% CMK/IspE 1 0.01% IDI 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 800 19 BAHD (289) View species results
Alkaloid pathway 738 26 7DLGT (127) View species results
Phenylpropanoid pathway 612 13 POD (199) View species results
Flavonoid pathway 372 14 UFGT (201) View species results
Rosmarinic acid pathway 258 7 C4H (132) View species results
Steroid pathway 176 15 CAS (109) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3760 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 667 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: G8O/G8H
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Gene Pathway Family Confidence Status Best Target
TchiHiC_scaffold_90419240.1 Alkaloid G8O/G8H medium pass G8O_G8H__00001__sp_A0A2H4DGV8_C7BL6_INUHU
TchiHiC_scaffold_90419290.1 Alkaloid G8O/G8H medium borderline G8O_G8H__00003__sp_F8S1H3_C7BL1_HELAN
TchiHiC_scaffold_90419300.1 Alkaloid G8O/G8H medium borderline G8O_G8H__00003__sp_F8S1H3_C7BL1_HELAN
TchiHiC_scaffold_90419330.1 Alkaloid G8O/G8H medium borderline G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
TchiHiC_scaffold_90424330.1 Alkaloid G8O/G8H medium borderline G8O_G8H__00001__sp_A0A2H4DGV8_C7BL6_INUHU
TchiHiC_scaffold_90425420.1 Alkaloid G8O/G8H low borderline G8O_G8H__00003__sp_F8S1H3_C7BL1_HELAN
TchiHiC_scaffold_90426150.1 Alkaloid G8O/G8H medium borderline G8O_G8H__00001__sp_A0A2H4DGV8_C7BL6_INUHU