PlantSME Plant secondary metabolism enzyme database

Taxus chinensis (taxus_chinensis)

Imported from atlas release summary for Taxus chinensis.

2956
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 800 19 BAHD (289) View species results
Alkaloid pathway 738 26 7DLGT (127) View species results
Phenylpropanoid pathway 612 13 POD (199) View species results
Flavonoid pathway 372 14 UFGT (201) View species results
Rosmarinic acid pathway 258 7 C4H (132) View species results
Steroid pathway 176 15 CAS (109) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3760 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 667 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
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Gene Pathway Family Confidence Status
TchiHiC_scaffold_10002190.1 Alkaloid GS medium pass
TchiHiC_scaffold_100043870.1 Alkaloid GS low borderline
TchiHiC_scaffold_100062170.1 Alkaloid GS low borderline
TchiHiC_scaffold_100075120.1 Alkaloid GS low borderline
TchiHiC_scaffold_10014740.1 Alkaloid GS low borderline
TchiHiC_scaffold_10014760.1 Alkaloid GS low borderline
TchiHiC_scaffold_10014810.1 Alkaloid GS low borderline
TchiHiC_scaffold_10015120.1 Alkaloid GS low borderline
TchiHiC_scaffold_10015130.1 Alkaloid GS low borderline
TchiHiC_scaffold_10015140.1 Alkaloid GS low borderline
TchiHiC_scaffold_10016300.1 Alkaloid GS low borderline
TchiHiC_scaffold_10016310.1 Alkaloid GS low borderline
TchiHiC_scaffold_10016340.1 Alkaloid GS low borderline
TchiHiC_scaffold_10016380.1 Alkaloid GS low borderline
TchiHiC_scaffold_10016460.1 Alkaloid GS low borderline
TchiHiC_scaffold_10016470.1 Alkaloid GS low borderline
TchiHiC_scaffold_10028790.1 Alkaloid GS low borderline
TchiHiC_scaffold_10037730.1 Alkaloid GS medium pass
TchiHiC_scaffold_110081730.1 Alkaloid GS low borderline
TchiHiC_scaffold_110089360.1 Alkaloid GS low borderline
TchiHiC_scaffold_110089920.1 Alkaloid GS high pass
TchiHiC_scaffold_110089940.1 Alkaloid GS high pass
TchiHiC_scaffold_110089960.1 Alkaloid GS high pass
TchiHiC_scaffold_110093120.1 Alkaloid GS low borderline
TchiHiC_scaffold_110098370.1 Alkaloid GS high pass
TchiHiC_scaffold_120152400.1 Alkaloid GS low borderline
TchiHiC_scaffold_120152410.1 Alkaloid GS medium pass
TchiHiC_scaffold_120152490.1 Alkaloid GS high pass
TchiHiC_scaffold_120153850.1 Alkaloid GS low borderline
TchiHiC_scaffold_120162840.1 Alkaloid GS low borderline
TchiHiC_scaffold_120164430.1 Alkaloid GS medium pass
TchiHiC_scaffold_120168190.1 Alkaloid GS medium pass
TchiHiC_scaffold_20172410.1 Alkaloid GS high pass
TchiHiC_scaffold_20172620.1 Alkaloid GS high pass
TchiHiC_scaffold_20207230.1 Alkaloid GS low borderline
TchiHiC_scaffold_40239660.1 Alkaloid GS low borderline
TchiHiC_scaffold_40240070.1 Alkaloid GS low borderline
TchiHiC_scaffold_40240080.1 Alkaloid GS low borderline
TchiHiC_scaffold_40256990.1 Alkaloid GS low borderline
TchiHiC_scaffold_50279350.1 Alkaloid GS low borderline
TchiHiC_scaffold_50288800.1 Alkaloid GS low borderline
TchiHiC_scaffold_60294710.1 Alkaloid GS low borderline
TchiHiC_scaffold_60298570.1 Alkaloid GS medium pass
TchiHiC_scaffold_60298630.1 Alkaloid GS medium pass
TchiHiC_scaffold_60298640.1 Alkaloid GS medium pass
TchiHiC_scaffold_60299730.1 Alkaloid GS low borderline
TchiHiC_scaffold_60305450.1 Alkaloid GS low borderline
TchiHiC_scaffold_60308400.1 Alkaloid GS low borderline
TchiHiC_scaffold_60308520.1 Alkaloid GS medium pass
TchiHiC_scaffold_60308590.1 Alkaloid GS medium pass