PlantSME Plant secondary metabolism enzyme database

Taxus chinensis (taxus_chinensis)

Imported from atlas release summary for Taxus chinensis.

2956
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 800 19 BAHD (289) View species results
Alkaloid pathway 738 26 7DLGT (127) View species results
Phenylpropanoid pathway 612 13 POD (199) View species results
Flavonoid pathway 372 14 UFGT (201) View species results
Rosmarinic acid pathway 258 7 C4H (132) View species results
Steroid pathway 176 15 CAS (109) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3760 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 667 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
TchiHiC_scaffold_50274970.1 Alkaloid IO medium borderline
TchiHiC_scaffold_60297960.1 Alkaloid IO medium borderline
TchiHiC_scaffold_60311010.1 Alkaloid IO low borderline
TchiHiC_scaffold_60311500.1 Alkaloid IO medium borderline
TchiHiC_scaffold_60315870.1 Alkaloid IO medium borderline
TchiHiC_scaffold_60315960.1 Alkaloid IO medium borderline
TchiHiC_scaffold_60316640.1 Alkaloid IO medium borderline
TchiHiC_scaffold_60323270.1 Alkaloid IO medium borderline
TchiHiC_scaffold_60325500.1 Alkaloid IO medium borderline
TchiHiC_scaffold_60327370.1 Alkaloid IO low borderline
TchiHiC_scaffold_60327400.1 Alkaloid IO low borderline
TchiHiC_scaffold_60327410.1 Alkaloid IO low borderline
TchiHiC_scaffold_60327440.1 Alkaloid IO low borderline
TchiHiC_scaffold_70337280.1 Alkaloid IO medium borderline
TchiHiC_scaffold_70340160.1 Alkaloid IO low borderline
TchiHiC_scaffold_70340430.1 Alkaloid IO low borderline
TchiHiC_scaffold_70340460.1 Alkaloid IO low borderline
TchiHiC_scaffold_70344500.1 Alkaloid IO medium borderline
TchiHiC_scaffold_70346040.1 Alkaloid IO low borderline
TchiHiC_scaffold_70346960.1 Alkaloid IO low borderline
TchiHiC_scaffold_70346990.1 Alkaloid IO low borderline
TchiHiC_scaffold_80376800.1 Alkaloid IO low borderline
TchiHiC_scaffold_80376940.1 Alkaloid IO low borderline
TchiHiC_scaffold_80377260.1 Alkaloid IO low borderline
TchiHiC_scaffold_80380360.1 Alkaloid IO medium borderline
TchiHiC_scaffold_90409830.1 Alkaloid IO low borderline
TchiHiC_scaffold_90409840.1 Alkaloid IO medium borderline
TchiHiC_scaffold_90417110.1 Alkaloid IO low borderline
TchiHiC_scaffold_90417480.1 Alkaloid IO low borderline
TchiHiC_scaffold_90417510.1 Alkaloid IO low borderline
TchiHiC_scaffold_90417590.1 Alkaloid IO medium pass
TchiHiC_scaffold_90417600.1 Alkaloid IO medium pass
TchiHiC_scaffold_90417670.1 Alkaloid IO low borderline
TchiHiC_scaffold_90417740.1 Alkaloid IO low borderline
TchiHiC_scaffold_90417790.1 Alkaloid IO medium pass
TchiHiC_scaffold_90417800.1 Alkaloid IO medium pass
TchiHiC_scaffold_90417820.1 Alkaloid IO medium pass
TchiHiC_scaffold_90420680.1 Alkaloid IO low borderline
TchiHiC_scaffold_90420730.1 Alkaloid IO low borderline
TchiHiC_scaffold_90420760.1 Alkaloid IO medium pass
TchiHiC_scaffold_90423130.1 Alkaloid IO low borderline