PlantSME Plant secondary metabolism enzyme database

Taxus chinensis (taxus_chinensis)

Imported from atlas release summary for Taxus chinensis.

2956
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 800 19 BAHD (289) View species results
Alkaloid pathway 738 26 7DLGT (127) View species results
Phenylpropanoid pathway 612 13 POD (199) View species results
Flavonoid pathway 372 14 UFGT (201) View species results
Rosmarinic acid pathway 258 7 C4H (132) View species results
Steroid pathway 176 15 CAS (109) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3760 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 667 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status
TchiHiC_scaffold_40227930.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_40227940.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_40227980.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_40227990.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_40228000.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_40228010.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_40228020.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_40228030.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_40228210.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_40236590.1 Phenylpropanoid LAC low borderline
TchiHiC_scaffold_40243000.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_40243020.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_40243030.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_40257550.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_40257560.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_50270230.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_50281600.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_50285420.1 Phenylpropanoid LAC low borderline
TchiHiC_scaffold_50291030.1 Phenylpropanoid LAC low borderline
TchiHiC_scaffold_50291040.1 Phenylpropanoid LAC low borderline
TchiHiC_scaffold_50291050.1 Phenylpropanoid LAC low borderline
TchiHiC_scaffold_60298300.1 Phenylpropanoid LAC low borderline
TchiHiC_scaffold_60309440.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_60325550.1 Phenylpropanoid LAC low borderline
TchiHiC_scaffold_70332360.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_70344890.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_70350070.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_80369040.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_80376010.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_80376070.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_80376080.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_80376130.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_80376160.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_80399250.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_90413250.1 Phenylpropanoid LAC low borderline
TchiHiC_scaffold_90422330.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_90422380.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_90423560.1 Phenylpropanoid LAC medium pass
TchiHiC_scaffold_90426310.1 Phenylpropanoid LAC medium pass