Taxus chinensis (taxus_chinensis)
Imported from atlas release summary for Taxus chinensis.
2956
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2956
Candidate Genes
C3'H/CYP98A
7.14%
C4H
6.91%
CYP76
5.33%
IFS
4.85%
BAHD
4.84%
UGT
3.95%
T3O
3.49%
7DLGT
3.24%
Other Families
60.25%
More Families (97)
DWF4/CYP90B1
255
3.07%
UFGT
248
2.99%
4CL
222
2.67%
POD
220
2.65%
F3H
209
2.52%
H6H
175
2.11%
BR6OX2/CYP85A2
168
2.02%
F3'H/CYP75B
161
1.94%
HCT
157
1.89%
CAS
139
1.67%
T16H
118
1.42%
CODM/T6ODM
117
1.41%
NMT
115
1.38%
IFR
115
1.38%
RAS
108
1.3%
G8O/G8H
107
1.29%
PMT
104
1.25%
TRI/TRII
97
1.17%
IO
91
1.1%
LAC
89
1.07%
CAD
86
1.04%
STR
83
1.0%
CYP90D1
82
0.99%
F3'5'H/CYP75A
78
0.94%
TPS
78
0.94%
SGD
74
0.89%
BR6OX1/CYP85A1
67
0.81%
GS
65
0.78%
FNS
63
0.76%
COMT
63
0.76%
ANS/LDOX
59
0.71%
GES
57
0.69%
SMT1/SMT2/SMT3
52
0.63%
F5H/CYP84A
51
0.61%
ANR
50
0.6%
CPD/CYP90A1
50
0.6%
CCR
48
0.58%
COR
47
0.57%
8HGO
46
0.55%
TAT
46
0.55%
7DLH
45
0.54%
PYKS
43
0.52%
BBE
42
0.51%
CSE
41
0.49%
ROT3/CYP90C1
38
0.46%
SLS
35
0.42%
CYP719
35
0.42%
16OMT
33
0.4%
CYP80B1
32
0.39%
DFR
32
0.39%
PAL
30
0.36%
ISY
26
0.31%
CYP71
24
0.29%
NCS
23
0.28%
CYP51G1
17
0.2%
GGPPS
17
0.2%
CHS
13
0.16%
CCoAOMT
13
0.16%
FPPS
13
0.16%
LAMT
12
0.14%
FLS
11
0.13%
SQE
11
0.13%
MPO
10
0.12%
6OMT_4OMT_SOMT
10
0.12%
XMT_MXMT_DXMT
10
0.12%
SQS/FDFT1
10
0.12%
MVK
10
0.12%
ADC
9
0.11%
DWF1
9
0.11%
CPR
8
0.1%
DET2
7
0.08%
CNMT
6
0.07%
SMO1/SMO2
6
0.07%
HMGR
6
0.07%
DXS
6
0.07%
CHI
5
0.06%
MCT/IspD
5
0.06%
TDC
4
0.05%
AACT
4
0.05%
MVD
4
0.05%
ODC
3
0.04%
CYP80F1
3
0.04%
PMK
3
0.04%
TYDC_DDC
2
0.02%
HPPR
2
0.02%
HYD1
2
0.02%
HDR/IspH
2
0.02%
MDS/IspF
2
0.02%
HMGS
2
0.02%
DWF5
1
0.01%
FK
1
0.01%
DWF7
1
0.01%
CPI1
1
0.01%
DXR
1
0.01%
HDS/IspG
1
0.01%
CMK/IspE
1
0.01%
IDI
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 800 | 19 | BAHD (289) | View species results |
| Alkaloid pathway | 738 | 26 | 7DLGT (127) | View species results |
| Phenylpropanoid pathway | 612 | 13 | POD (199) | View species results |
| Flavonoid pathway | 372 | 14 | UFGT (201) | View species results |
| Rosmarinic acid pathway | 258 | 7 | C4H (132) | View species results |
| Steroid pathway | 176 | 15 | CAS (109) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 3760 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 667 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| TchiHiC_scaffold_20180400.1 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| TchiHiC_scaffold_20185390.1 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| TchiHiC_scaffold_20195820.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| TchiHiC_scaffold_20206180.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| TchiHiC_scaffold_20206410.1 | Alkaloid | NMT | low | borderline | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| TchiHiC_scaffold_30211960.1 | Alkaloid | NMT | medium | pass | NMT__00015__sp_C8YTM5_PEAM2_WHEAT |
| TchiHiC_scaffold_30216170.1 | Alkaloid | NMT | low | borderline | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| TchiHiC_scaffold_30216180.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| TchiHiC_scaffold_30220860.1 | Alkaloid | NMT | low | borderline | NMT__00030__sp_Q43088_RBCMT_PEA |
| TchiHiC_scaffold_30221430.1 | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| TchiHiC_scaffold_40223770.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| TchiHiC_scaffold_40246550.1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| TchiHiC_scaffold_40248580.1 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| TchiHiC_scaffold_40249510.1 | Alkaloid | NMT | medium | borderline | NMT__00010__sp_A4GE70_DXMT1_COFCA |
| TchiHiC_scaffold_40252650.1 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| TchiHiC_scaffold_40252690.1 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| TchiHiC_scaffold_40258900.1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| TchiHiC_scaffold_40262070.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| TchiHiC_scaffold_40263000.1 | Alkaloid | NMT | low | borderline | NMT__00015__sp_C8YTM5_PEAM2_WHEAT |
| TchiHiC_scaffold_50264130.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| TchiHiC_scaffold_50267840.1 | Alkaloid | NMT | medium | pass | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| TchiHiC_scaffold_50271850.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| TchiHiC_scaffold_50292320.1 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| TchiHiC_scaffold_60294800.1 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| TchiHiC_scaffold_60298680.1 | Alkaloid | NMT | medium | borderline | NMT__00001__sp_A0A075D654_ANMT_RAUSE |
| TchiHiC_scaffold_60300110.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| TchiHiC_scaffold_60302310.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| TchiHiC_scaffold_60302320.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| TchiHiC_scaffold_60303900.1 | Alkaloid | NMT | medium | borderline | NMT__00043__sp_Q8H0D2_DXMT1_COFAR |
| TchiHiC_scaffold_60305090.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| TchiHiC_scaffold_60305100.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| TchiHiC_scaffold_60316850.1 | Alkaloid | NMT | low | borderline | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| TchiHiC_scaffold_60321270.1 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| TchiHiC_scaffold_60324690.1 | Alkaloid | NMT | medium | borderline | NMT__00010__sp_A4GE70_DXMT1_COFCA |
| TchiHiC_scaffold_60325250.1 | Alkaloid | NMT | low | borderline | NMT__00015__sp_C8YTM5_PEAM2_WHEAT |
| TchiHiC_scaffold_60329720.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| TchiHiC_scaffold_60330340.1 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| TchiHiC_scaffold_60330730.1 | Alkaloid | NMT | medium | pass | NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI |
| TchiHiC_scaffold_60330870.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| TchiHiC_scaffold_60331500.1 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| TchiHiC_scaffold_70333080.1 | Alkaloid | NMT | medium | pass | NMT__00019__sp_O22781_SUVH2_ARATH |
| TchiHiC_scaffold_70333110.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| TchiHiC_scaffold_70348410.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| TchiHiC_scaffold_70348420.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| TchiHiC_scaffold_70351640.1 | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| TchiHiC_scaffold_80365480.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| TchiHiC_scaffold_80366850.1 | Alkaloid | NMT | low | borderline | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| TchiHiC_scaffold_80378200.1 | Alkaloid | NMT | medium | borderline | NMT__00006__sp_A0A6C0WW38_CKCS_CAMSB |
| TchiHiC_scaffold_80382260.1 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| TchiHiC_scaffold_80382630.1 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |