PlantSME Plant secondary metabolism enzyme database

Taxus chinensis (taxus_chinensis)

Imported from atlas release summary for Taxus chinensis.

2956
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 800 19 BAHD (289) View species results
Alkaloid pathway 738 26 7DLGT (127) View species results
Phenylpropanoid pathway 612 13 POD (199) View species results
Flavonoid pathway 372 14 UFGT (201) View species results
Rosmarinic acid pathway 258 7 C4H (132) View species results
Steroid pathway 176 15 CAS (109) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3760 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 667 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TPS
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Gene Pathway Family Confidence Status Best Target
TchiHiC_scaffold_60306620.1 Terpenoid TPS medium pass TPS__00162__sp_Q675L4_TPSD1_PICAB
TchiHiC_scaffold_60306630.1 Terpenoid TPS medium pass TPS__00162__sp_Q675L4_TPSD1_PICAB
TchiHiC_scaffold_60306640.1 Terpenoid TPS medium pass TPS__00163__sp_Q675L5_TPSD2_PICAB
TchiHiC_scaffold_60306650.1 Terpenoid TPS medium pass TPS__00145__sp_M4HYC6_TPSD2_PINCO
TchiHiC_scaffold_60306660.1 Terpenoid TPS medium pass TPS__00145__sp_M4HYC6_TPSD2_PINCO
TchiHiC_scaffold_60306670.1 Terpenoid TPS medium pass TPS__00162__sp_Q675L4_TPSD1_PICAB
TchiHiC_scaffold_70352240.1 Terpenoid TPS medium pass TPS__00015__sp_A0A1L6Z3A5_TPS5_PSEAD
TchiHiC_scaffold_70353080.1 Terpenoid TPS medium pass TPS__00015__sp_A0A1L6Z3A5_TPS5_PSEAD
TchiHiC_scaffold_70354600.1 Terpenoid TPS medium pass TPS__00069__sp_C0PPR1_LLOS2_PICSI
TchiHiC_scaffold_70354870.1 Terpenoid TPS medium pass TPS__00107__sp_F2XFA6_LLOS1_PICSI
TchiHiC_scaffold_70354880.1 Terpenoid TPS medium pass TPS__00070__sp_C0PT35_CINES_PICSI
TchiHiC_scaffold_70354890.1 Terpenoid TPS medium pass TPS__00096__sp_F2XF94_3CAR1_PICXS
TchiHiC_scaffold_70354940.1 Terpenoid TPS medium pass TPS__00069__sp_C0PPR1_LLOS2_PICSI
TchiHiC_scaffold_70354960.1 Terpenoid TPS medium pass TPS__00100__sp_F2XF98_CINES_PICXS
TchiHiC_scaffold_70355000.1 Terpenoid TPS medium pass TPS__00101__sp_F2XF99_FARNS_PICXS
TchiHiC_scaffold_70355020.1 Terpenoid TPS medium pass TPS__00069__sp_C0PPR1_LLOS2_PICSI
TchiHiC_scaffold_70355030.1 Terpenoid TPS medium pass TPS__00069__sp_C0PPR1_LLOS2_PICSI
TchiHiC_scaffold_70355040.1 Terpenoid TPS medium pass TPS__00069__sp_C0PPR1_LLOS2_PICSI
TchiHiC_scaffold_70359260.1 Terpenoid TPS medium pass TPS__00100__sp_F2XF98_CINES_PICXS
TchiHiC_scaffold_70359310.1 Terpenoid TPS medium pass TPS__00152__sp_Q20HU7_LIMNS_PICSI
TchiHiC_scaffold_70359360.1 Terpenoid TPS medium pass TPS__00092__sp_F1CKI9_3CAR3_PICSI
TchiHiC_scaffold_70359370.1 Terpenoid TPS medium pass TPS__00180__sp_R9QMR5_ATERP_PINBN
TchiHiC_scaffold_70359400.1 Terpenoid TPS low borderline TPS__00180__sp_R9QMR5_ATERP_PINBN
TchiHiC_scaffold_70359440.1 Terpenoid TPS medium pass TPS__00191__sp_R9QMZ0_ATERP_PINCO
TchiHiC_scaffold_80373890.1 Terpenoid TPS medium pass TPS__00100__sp_F2XF98_CINES_PICXS
TchiHiC_scaffold_80373930.1 Terpenoid TPS medium pass TPS__00184__sp_R9QMW3_BPHL2_PINCO
TchiHiC_scaffold_90411810.1 Terpenoid TPS medium pass TPS__00096__sp_F2XF94_3CAR1_PICXS
TchiHiC_scaffold_90411820.1 Terpenoid TPS medium pass TPS__00070__sp_C0PT35_CINES_PICSI