Taxus chinensis (taxus_chinensis)
Imported from atlas release summary for Taxus chinensis.
3715
Candidate Protein Records
2956
Pathway-Level Records
8306
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
8306
Family-Level Calls
C3'H/CYP98A
7.14%
C4H
6.91%
CYP76
5.33%
IFS
4.85%
BAHD
4.84%
UGT
3.95%
T3O
3.49%
7DLGT
3.24%
Other Families
60.25%
More Families (97)
DWF4/CYP90B1
255
3.07%
UFGT
248
2.99%
4CL
222
2.67%
POD
220
2.65%
F3H
209
2.52%
H6H
175
2.11%
BR6OX2/CYP85A2
168
2.02%
F3'H/CYP75B
161
1.94%
HCT
157
1.89%
CAS
139
1.67%
T16H
118
1.42%
CODM/T6ODM
117
1.41%
NMT
115
1.38%
IFR
115
1.38%
RAS
108
1.3%
G8O/G8H
107
1.29%
PMT
104
1.25%
TRI/TRII
97
1.17%
IO
91
1.1%
LAC
89
1.07%
CAD
86
1.04%
STR
83
1.0%
CYP90D1
82
0.99%
F3'5'H/CYP75A
78
0.94%
TPS
78
0.94%
SGD
74
0.89%
BR6OX1/CYP85A1
67
0.81%
GS
65
0.78%
FNS
63
0.76%
COMT
63
0.76%
ANS/LDOX
59
0.71%
GES
57
0.69%
SMT1/SMT2/SMT3
52
0.63%
F5H/CYP84A
51
0.61%
ANR
50
0.6%
CPD/CYP90A1
50
0.6%
CCR
48
0.58%
COR
47
0.57%
8HGO
46
0.55%
TAT
46
0.55%
7DLH
45
0.54%
PYKS
43
0.52%
BBE
42
0.51%
CSE
41
0.49%
ROT3/CYP90C1
38
0.46%
SLS
35
0.42%
CYP719
35
0.42%
16OMT
33
0.4%
CYP80B1
32
0.39%
DFR
32
0.39%
PAL
30
0.36%
ISY
26
0.31%
CYP71
24
0.29%
NCS
23
0.28%
CYP51G1
17
0.2%
GGPPS
17
0.2%
CHS
13
0.16%
CCoAOMT
13
0.16%
FPPS
13
0.16%
LAMT
12
0.14%
FLS
11
0.13%
SQE
11
0.13%
MPO
10
0.12%
6OMT_4OMT_SOMT
10
0.12%
XMT_MXMT_DXMT
10
0.12%
SQS/FDFT1
10
0.12%
MVK
10
0.12%
ADC
9
0.11%
DWF1
9
0.11%
CPR
8
0.1%
DET2
7
0.08%
CNMT
6
0.07%
SMO1/SMO2
6
0.07%
HMGR
6
0.07%
DXS
6
0.07%
CHI
5
0.06%
MCT/IspD
5
0.06%
TDC
4
0.05%
AACT
4
0.05%
MVD
4
0.05%
ODC
3
0.04%
CYP80F1
3
0.04%
PMK
3
0.04%
TYDC_DDC
2
0.02%
HPPR
2
0.02%
HYD1
2
0.02%
HDR/IspH
2
0.02%
MDS/IspF
2
0.02%
HMGS
2
0.02%
DWF5
1
0.01%
FK
1
0.01%
DWF7
1
0.01%
CPI1
1
0.01%
DXR
1
0.01%
HDS/IspG
1
0.01%
CMK/IspE
1
0.01%
IDI
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 800 | 19 | BAHD (289) | View species results |
| Alkaloid pathway | 738 | 26 | 7DLGT (127) | View species results |
| Phenylpropanoid pathway | 612 | 13 | POD (199) | View species results |
| Flavonoid pathway | 372 | 14 | UFGT (201) | View species results |
| Rosmarinic acid pathway | 258 | 7 | C4H (132) | View species results |
| Steroid pathway | 176 | 15 | CAS (109) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 3760 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 667 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| TchiHiC_scaffold_50275740.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_50275770.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_50275780.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_50276160.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_50283010.1 | Rosmarinic Acid | 4CL | low | borderline |
| TchiHiC_scaffold_50283060.1 | Rosmarinic Acid | 4CL | low | borderline |
| TchiHiC_scaffold_60295200.1 | Rosmarinic Acid | 4CL | low | borderline |
| TchiHiC_scaffold_60295990.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_60296540.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_60317180.1 | Rosmarinic Acid | 4CL | low | borderline |
| TchiHiC_scaffold_60322020.1 | Rosmarinic Acid | 4CL | low | borderline |
| TchiHiC_scaffold_70334240.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_70347530.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_70347540.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_70348620.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_70348700.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_70348780.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_70348790.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_70348840.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_70348880.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_70353950.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_80367380.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_80379180.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_80379250.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_80384230.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_80402040.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_90410150.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_90410180.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_90412020.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_90412030.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_90412040.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_90412060.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_90412070.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_90412090.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_90412140.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_90412150.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_90412160.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_90412170.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_90412180.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_90412190.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_90412210.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_90412220.1 | Rosmarinic Acid | 4CL | medium | pass |
| TchiHiC_scaffold_90425060.1 | Rosmarinic Acid | 4CL | low | borderline |
| TchiHiC_scaffold_90428110.1 | Rosmarinic Acid | 4CL | low | borderline |
| TchiHiC_scaffold_90428260.1 | Rosmarinic Acid | 4CL | low | borderline |
| TchiHiC_scaffold_100044790.1 | Rosmarinic Acid | C4H | medium | pass |
| TchiHiC_scaffold_100044800.1 | Rosmarinic Acid | C4H | low | borderline |
| TchiHiC_scaffold_100044810.1 | Rosmarinic Acid | C4H | medium | pass |
| TchiHiC_scaffold_100044870.1 | Rosmarinic Acid | C4H | low | borderline |
| TchiHiC_scaffold_100044880.1 | Rosmarinic Acid | C4H | medium | pass |