PlantSME Plant secondary metabolism enzyme database

Taxus chinensis (taxus_chinensis)

Imported from atlas release summary for Taxus chinensis.

2956
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 800 19 BAHD (289) View species results
Alkaloid pathway 738 26 7DLGT (127) View species results
Phenylpropanoid pathway 612 13 POD (199) View species results
Flavonoid pathway 372 14 UFGT (201) View species results
Rosmarinic acid pathway 258 7 C4H (132) View species results
Steroid pathway 176 15 CAS (109) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3760 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 667 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
TchiHiC_scaffold_30207910.1 Flavonoid ANS/LDOX medium borderline
TchiHiC_scaffold_40225980.1 Flavonoid ANS/LDOX medium borderline
TchiHiC_scaffold_40237550.1 Flavonoid ANS/LDOX low borderline
TchiHiC_scaffold_40237560.1 Flavonoid ANS/LDOX medium pass
TchiHiC_scaffold_40237700.1 Flavonoid ANS/LDOX medium borderline
TchiHiC_scaffold_50265360.1 Flavonoid ANS/LDOX medium borderline
TchiHiC_scaffold_50272460.1 Flavonoid ANS/LDOX medium borderline
TchiHiC_scaffold_50290230.1 Flavonoid ANS/LDOX medium borderline
TchiHiC_scaffold_60300840.1 Flavonoid ANS/LDOX medium borderline
TchiHiC_scaffold_60302400.1 Flavonoid ANS/LDOX medium borderline
TchiHiC_scaffold_60302430.1 Flavonoid ANS/LDOX medium borderline
TchiHiC_scaffold_60307740.1 Flavonoid ANS/LDOX medium borderline
TchiHiC_scaffold_60324890.1 Flavonoid ANS/LDOX low borderline
TchiHiC_scaffold_70335690.1 Flavonoid ANS/LDOX medium borderline
TchiHiC_scaffold_70336740.1 Flavonoid ANS/LDOX medium borderline
TchiHiC_scaffold_70359300.1 Flavonoid ANS/LDOX low borderline
TchiHiC_scaffold_80365910.1 Flavonoid ANS/LDOX medium borderline
TchiHiC_scaffold_80373360.1 Flavonoid ANS/LDOX medium borderline
TchiHiC_scaffold_80383070.1 Flavonoid ANS/LDOX low borderline
TchiHiC_scaffold_80392720.1 Flavonoid ANS/LDOX medium borderline
TchiHiC_scaffold_80398020.1 Flavonoid ANS/LDOX medium borderline
TchiHiC_scaffold_80398080.1 Flavonoid ANS/LDOX low borderline
TchiHiC_scaffold_80398100.1 Flavonoid ANS/LDOX medium borderline
TchiHiC_scaffold_80398150.1 Flavonoid ANS/LDOX low borderline
TchiHiC_scaffold_80398160.1 Flavonoid ANS/LDOX low borderline
TchiHiC_scaffold_80398170.1 Flavonoid ANS/LDOX medium borderline
TchiHiC_scaffold_80398180.1 Flavonoid ANS/LDOX medium pass
TchiHiC_scaffold_80398350.1 Flavonoid ANS/LDOX medium borderline
TchiHiC_scaffold_80398410.1 Flavonoid ANS/LDOX medium borderline
TchiHiC_scaffold_80398460.1 Flavonoid ANS/LDOX medium borderline
TchiHiC_scaffold_80398520.1 Flavonoid ANS/LDOX medium borderline
TchiHiC_scaffold_80400770.1 Flavonoid ANS/LDOX medium pass
TchiHiC_scaffold_90437320.1 Flavonoid ANS/LDOX medium borderline
TchiHiC_scaffold_100072000.1 Flavonoid C4H low borderline
TchiHiC_scaffold_100075320.1 Flavonoid C4H low borderline
TchiHiC_scaffold_10039490.1 Flavonoid C4H low borderline
TchiHiC_scaffold_110113750.1 Flavonoid C4H low borderline
TchiHiC_scaffold_110122980.1 Flavonoid C4H low borderline
TchiHiC_scaffold_120133380.1 Flavonoid C4H low borderline
TchiHiC_scaffold_120155240.1 Flavonoid C4H low borderline
TchiHiC_scaffold_20182560.1 Flavonoid C4H low borderline
TchiHiC_scaffold_30216660.1 Flavonoid C4H low borderline
TchiHiC_scaffold_40228380.1 Flavonoid C4H medium borderline
TchiHiC_scaffold_40238170.1 Flavonoid C4H low borderline
TchiHiC_scaffold_40238190.1 Flavonoid C4H medium borderline
TchiHiC_scaffold_40255990.1 Flavonoid C4H medium pass
TchiHiC_scaffold_40256010.1 Flavonoid C4H medium borderline
TchiHiC_scaffold_60318710.1 Flavonoid C4H medium pass
TchiHiC_scaffold_60321560.1 Flavonoid C4H low borderline
TchiHiC_scaffold_60322680.1 Flavonoid C4H medium borderline