PlantSME Plant secondary metabolism enzyme database

Trifolium pratense (trifolium_pratense)

Imported from atlas release summary for Trifolium pratense.

2510
Candidate Protein Records
2106
Pathway-Level Records
5331
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 27.3% Alkaloid pathway 23.98% Phenylpropanoid pathway 20.23% Flavonoid pathway 15.05% Rosmarinic acid pathway 8.12% Steroid pathway 5.32%
Family Distribution
C4H 7.26% C3'H/CYP98A 5.98% BAHD 4.91% UGT 4.39% CYP76 3.92% POD 3.88% IFS 3.68% 7DLGT 3.6%
Other Families 62.37%
More Families (96)
UFGT 188 3.53% T3O 176 3.3% 4CL 168 3.15% NMT 139 2.61% F3'H/CYP75B 120 2.25% F3H 120 2.25% BR6OX2/CYP85A2 113 2.12% DWF4/CYP90B1 107 2.01% CODM/T6ODM 104 1.95% CYP71 83 1.56% G8O/G8H 76 1.43% STR 72 1.35% SMT1/SMT2/SMT3 72 1.35% H6H 71 1.33% CAD 68 1.28% SGD 67 1.26% COMT 64 1.2% FNS 57 1.07% CAS 57 1.07% TRI/TRII 52 0.98% T16H 51 0.96% GS 49 0.92% IFR 49 0.92% ANS/LDOX 48 0.9% PYKS 47 0.88% CSE 46 0.86% F5H/CYP84A 44 0.83% TPS 44 0.83% 7DLH 43 0.81% HCT 43 0.81% LAC 37 0.69% CYP90D1 37 0.69% GES 36 0.68% PAL 36 0.68% 16OMT 35 0.66% RAS 35 0.66% F3'5'H/CYP75A 34 0.64% IO 29 0.54% CYP51G1 29 0.54% NCS 27 0.51% 8HGO 27 0.51% COR 27 0.51% ANR 25 0.47% PMT 24 0.45% CHS 24 0.45% BR6OX1/CYP85A1 24 0.45% SLS 22 0.41% CCR 22 0.41% BBE 21 0.39% TAT 20 0.38% ROT3/CYP90C1 19 0.36% CPD/CYP90A1 18 0.34% DFR 16 0.3% MPO 15 0.28% CYP719 14 0.26% CCoAOMT 14 0.26% HMGR 13 0.24% LAMT 12 0.23% ISY 11 0.21% FPPS 11 0.21% 6OMT_4OMT_SOMT 10 0.19% CNMT 9 0.17% CPR 9 0.17% SQE 9 0.17% DXS 9 0.17% XMT_MXMT_DXMT 8 0.15% HPPR 8 0.15% SQS/FDFT1 8 0.15% DET2 8 0.15% AACT 8 0.15% CYP80B1 7 0.13% CHI 7 0.13% ODC 6 0.11% FLS 6 0.11% MVD 6 0.11% MVK 6 0.11% GGPPS 5 0.09% TDC 4 0.08% SMO1/SMO2 4 0.08% MCT/IspD 4 0.08% TYDC_DDC 3 0.06% DWF5 3 0.06% DWF1 3 0.06% CPI1 3 0.06% HYD1 3 0.06% HDR/IspH 3 0.06% ADC 2 0.04% HMGS 2 0.04% DXR 2 0.04% IDI 2 0.04% FK 1 0.02% DWF7 1 0.02% PMK 1 0.02% MDS/IspF 1 0.02% CMK/IspE 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 575 19 UGT (209) View species results
Alkaloid pathway 505 23 7DLGT (90) View species results
Phenylpropanoid pathway 426 13 POD (188) View species results
Flavonoid pathway 317 14 UFGT (181) View species results
Rosmarinic acid pathway 171 7 C4H (77) View species results
Steroid pathway 112 14 CAS (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 2157 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
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Protein/Isoform Record Pathway Family Confidence Status Best Target
TpraFKJA01011081.10140840.1 Terpenoid BAHD medium pass BAHD__00012__sp_A1XWY7_CFAT_PETHY
TpraFKJA01012813.10145170.1 Terpenoid BAHD medium pass BAHD__00052__sp_Q8GWG0_GPAT9_ARATH
TpraFKJA01013003.10145720.1 Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
TpraFKJA01013453.10146750.1 Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
TpraFKJA01013707.10147260.1 Terpenoid BAHD medium pass BAHD__00075__sp_Q9FJB4_GPC1_ARATH
TpraFKJA01015795.10151620.1 Terpenoid BAHD medium pass BAHD__00006__sp_A0A2R6Q326_AT16_ACTCC
TpraFKJA01016498.10152920.1 Terpenoid BAHD medium pass BAHD__00009__sp_A0A4P1QUJ3_TTHAT_LUPAN
TpraFKJA01025356.10167120.1 Terpenoid BAHD medium pass BAHD__00024__sp_O23393_BIA1_ARATH
TpraFKJA01028213.10171330.1 Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
TpraFKJA01028635.10171920.1 Terpenoid BAHD medium pass BAHD__00058__sp_Q8LG50_LPAT2_ARATH
TpraFKJA01029108.10172540.1 Terpenoid BAHD medium pass BAHD__00081__sp_Q9LJB4_5MAT_ARATH
TpraFKJA01029208.10172730.1 Terpenoid BAHD medium pass BAHD__00017__sp_F4IDU4_MBOA1_ARATH