PlantSME Plant secondary metabolism enzyme database

Trifolium pratense (trifolium_pratense)

Imported from atlas release summary for Trifolium pratense.

2106
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 575 19 UGT (209) View species results
Alkaloid pathway 505 23 7DLGT (90) View species results
Phenylpropanoid pathway 426 13 POD (188) View species results
Flavonoid pathway 317 14 UFGT (181) View species results
Rosmarinic acid pathway 171 7 C4H (77) View species results
Steroid pathway 112 14 CAS (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2157 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
Tpra01G0006510.1 Alkaloid PYKS low borderline
Tpra01G0009870.1 Alkaloid PYKS low borderline
Tpra01G0009880.1 Alkaloid PYKS low borderline
Tpra01G0009890.1 Alkaloid PYKS low borderline
Tpra01G0014030.1 Alkaloid PYKS low borderline
Tpra02G0017010.1 Alkaloid PYKS low borderline
Tpra02G0027840.1 Alkaloid PYKS low borderline
Tpra02G0035960.1 Alkaloid PYKS high pass
Tpra02G0035970.1 Alkaloid PYKS high pass
Tpra02G0036060.1 Alkaloid PYKS high pass
Tpra02G0036080.1 Alkaloid PYKS high pass
Tpra02G0036090.1 Alkaloid PYKS medium pass
Tpra03G0022700.1 Alkaloid PYKS high pass
Tpra03G0022720.1 Alkaloid PYKS medium pass
Tpra03G0029700.1 Alkaloid PYKS high pass
Tpra03G0029720.1 Alkaloid PYKS high pass
Tpra04G0020680.1 Alkaloid PYKS low borderline
Tpra04G0022930.1 Alkaloid PYKS high pass
Tpra04G0029780.1 Alkaloid PYKS low borderline
Tpra05G0009390.1 Alkaloid PYKS low borderline
Tpra05G0011300.1 Alkaloid PYKS high pass
Tpra05G0011570.1 Alkaloid PYKS low borderline
Tpra05G0015530.1 Alkaloid PYKS low borderline
Tpra06G0021800.1 Alkaloid PYKS high pass
Tpra07G0018590.1 Alkaloid PYKS low borderline
Tpra07G0024340.1 Alkaloid PYKS low borderline
Tpra07G0024640.1 Alkaloid PYKS low borderline
TpraFKJA01000242.10018140.1 Alkaloid PYKS medium pass
TpraFKJA01000260.10019650.1 Alkaloid PYKS low borderline
TpraFKJA01000260.10019670.1 Alkaloid PYKS low borderline
TpraFKJA01000321.10027080.1 Alkaloid PYKS low borderline
TpraFKJA01000331.10028270.1 Alkaloid PYKS high pass
TpraFKJA01000476.10044100.1 Alkaloid PYKS medium pass
TpraFKJA01000476.10044110.1 Alkaloid PYKS high pass
TpraFKJA01000476.10044120.1 Alkaloid PYKS medium pass
TpraFKJA01000688.10065160.1 Alkaloid PYKS low borderline
TpraFKJA01000854.10077690.1 Alkaloid PYKS low borderline
TpraFKJA01000880.10079510.1 Alkaloid PYKS low borderline
TpraFKJA01001000.10086140.1 Alkaloid PYKS low borderline
TpraFKJA01001566.10103530.1 Alkaloid PYKS medium pass
TpraFKJA01002037.10108530.1 Alkaloid PYKS medium pass
TpraFKJA01002062.10108830.1 Alkaloid PYKS high pass
TpraFKJA01003778.10118580.1 Alkaloid PYKS medium pass
TpraFKJA01005025.10123370.1 Alkaloid PYKS low borderline
TpraFKJA01010022.10138080.1 Alkaloid PYKS high pass
TpraFKJA01010482.10139370.1 Alkaloid PYKS medium pass
TpraFKJA01026786.10169270.1 Alkaloid PYKS medium pass