Trifolium pratense (trifolium_pratense)
Imported from atlas release summary for Trifolium pratense.
2106
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2106
Candidate Genes
C4H
7.26%
C3'H/CYP98A
5.98%
BAHD
4.91%
UGT
4.39%
CYP76
3.92%
POD
3.88%
IFS
3.68%
7DLGT
3.6%
Other Families
62.37%
More Families (96)
UFGT
188
3.53%
T3O
176
3.3%
4CL
168
3.15%
NMT
139
2.61%
F3'H/CYP75B
120
2.25%
F3H
120
2.25%
BR6OX2/CYP85A2
113
2.12%
DWF4/CYP90B1
107
2.01%
CODM/T6ODM
104
1.95%
CYP71
83
1.56%
G8O/G8H
76
1.43%
STR
72
1.35%
SMT1/SMT2/SMT3
72
1.35%
H6H
71
1.33%
CAD
68
1.28%
SGD
67
1.26%
COMT
64
1.2%
FNS
57
1.07%
CAS
57
1.07%
TRI/TRII
52
0.98%
T16H
51
0.96%
GS
49
0.92%
IFR
49
0.92%
ANS/LDOX
48
0.9%
PYKS
47
0.88%
CSE
46
0.86%
F5H/CYP84A
44
0.83%
TPS
44
0.83%
7DLH
43
0.81%
HCT
43
0.81%
LAC
37
0.69%
CYP90D1
37
0.69%
GES
36
0.68%
PAL
36
0.68%
16OMT
35
0.66%
RAS
35
0.66%
F3'5'H/CYP75A
34
0.64%
IO
29
0.54%
CYP51G1
29
0.54%
NCS
27
0.51%
8HGO
27
0.51%
COR
27
0.51%
ANR
25
0.47%
PMT
24
0.45%
CHS
24
0.45%
BR6OX1/CYP85A1
24
0.45%
SLS
22
0.41%
CCR
22
0.41%
BBE
21
0.39%
TAT
20
0.38%
ROT3/CYP90C1
19
0.36%
CPD/CYP90A1
18
0.34%
DFR
16
0.3%
MPO
15
0.28%
CYP719
14
0.26%
CCoAOMT
14
0.26%
HMGR
13
0.24%
LAMT
12
0.23%
ISY
11
0.21%
FPPS
11
0.21%
6OMT_4OMT_SOMT
10
0.19%
CNMT
9
0.17%
CPR
9
0.17%
SQE
9
0.17%
DXS
9
0.17%
XMT_MXMT_DXMT
8
0.15%
HPPR
8
0.15%
SQS/FDFT1
8
0.15%
DET2
8
0.15%
AACT
8
0.15%
CYP80B1
7
0.13%
CHI
7
0.13%
ODC
6
0.11%
FLS
6
0.11%
MVD
6
0.11%
MVK
6
0.11%
GGPPS
5
0.09%
TDC
4
0.08%
SMO1/SMO2
4
0.08%
MCT/IspD
4
0.08%
TYDC_DDC
3
0.06%
DWF5
3
0.06%
DWF1
3
0.06%
CPI1
3
0.06%
HYD1
3
0.06%
HDR/IspH
3
0.06%
ADC
2
0.04%
HMGS
2
0.04%
DXR
2
0.04%
IDI
2
0.04%
FK
1
0.02%
DWF7
1
0.02%
PMK
1
0.02%
MDS/IspF
1
0.02%
CMK/IspE
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 575 | 19 | UGT (209) | View species results |
| Alkaloid pathway | 505 | 23 | 7DLGT (90) | View species results |
| Phenylpropanoid pathway | 426 | 13 | POD (188) | View species results |
| Flavonoid pathway | 317 | 14 | UFGT (181) | View species results |
| Rosmarinic acid pathway | 171 | 7 | C4H (77) | View species results |
| Steroid pathway | 112 | 14 | CAS (45) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 2157 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 340 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Tpra01G0005690.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra01G0007480.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra01G0017280.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra01G0023250.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra01G0030820.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra01G0031410.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra01G0032210.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra01G0032210.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra02G0007310.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra02G0026320.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra02G0028630.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra03G0006710.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra03G0009050.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra03G0013140.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra03G0016970.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra03G0016980.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra03G0019010.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra03G0024440.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra03G0031450.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra04G0004020.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra04G0007100.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra04G0017690.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Tpra04G0023470.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Tpra04G0023540.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Tpra04G0023550.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Tpra04G0024810.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra04G0025300.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra06G0005950.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Tpra06G0007360.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra06G0007390.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra06G0010620.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra06G0017740.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra06G0018450.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra06G0020990.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra07G0011440.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra07G0016480.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra07G0029410.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpra07G0031460.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Tpra07G0031470.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| TpraFKJA01000197.10011350.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| TpraFKJA01000197.10011360.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| TpraFKJA01000204.10012380.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| TpraFKJA01000209.10013660.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TpraFKJA01000280.10022480.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| TpraFKJA01000301.10025000.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TpraFKJA01000316.10026470.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| TpraFKJA01000436.10039740.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TpraFKJA01000436.10039760.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TpraFKJA01000528.10049330.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| TpraFKJA01000534.10049940.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |