PlantSME Plant secondary metabolism enzyme database

Trifolium pratense (trifolium_pratense)

Imported from atlas release summary for Trifolium pratense.

2106
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 575 19 UGT (209) View species results
Alkaloid pathway 505 23 7DLGT (90) View species results
Phenylpropanoid pathway 426 13 POD (188) View species results
Flavonoid pathway 317 14 UFGT (181) View species results
Rosmarinic acid pathway 171 7 C4H (77) View species results
Steroid pathway 112 14 CAS (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2157 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CPD/CYP90A1
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Gene Pathway Family Confidence Status
Tpra01G0004230.1 Steroid CPD/CYP90A1 medium borderline
Tpra01G0019070.1 Steroid CPD/CYP90A1 low borderline
Tpra02G0001760.1 Steroid CPD/CYP90A1 medium borderline
Tpra02G0004660.1 Steroid CPD/CYP90A1 medium borderline
Tpra02G0020410.1 Steroid CPD/CYP90A1 low borderline
Tpra02G0032910.1 Steroid CPD/CYP90A1 low borderline
Tpra02G0035060.1 Steroid CPD/CYP90A1 low borderline
Tpra03G0004980.1 Steroid CPD/CYP90A1 medium borderline
Tpra04G0000720.1 Steroid CPD/CYP90A1 medium borderline
Tpra04G0016290.1 Steroid CPD/CYP90A1 medium borderline
Tpra06G0016740.1 Steroid CPD/CYP90A1 low borderline
Tpra06G0018090.1 Steroid CPD/CYP90A1 low borderline
TpraFKJA01000292.10023970.1 Steroid CPD/CYP90A1 medium pass
TpraFKJA01000337.10029300.1 Steroid CPD/CYP90A1 low borderline
TpraFKJA01000890.10080200.1 Steroid CPD/CYP90A1 low borderline
TpraFKJA01001727.10105460.1 Steroid CPD/CYP90A1 low borderline
TpraFKJA01001831.10106640.1 Steroid CPD/CYP90A1 medium borderline
TpraFKJA01028112.10171160.1 Steroid CPD/CYP90A1 medium borderline