PlantSME Plant secondary metabolism enzyme database

Trifolium pratense (trifolium_pratense)

Imported from atlas release summary for Trifolium pratense.

2106
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 575 19 UGT (209) View species results
Alkaloid pathway 505 23 7DLGT (90) View species results
Phenylpropanoid pathway 426 13 POD (188) View species results
Flavonoid pathway 317 14 UFGT (181) View species results
Rosmarinic acid pathway 171 7 C4H (77) View species results
Steroid pathway 112 14 CAS (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2157 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BBE
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Gene Pathway Family Confidence Status
Tpra03G0013300.1 Alkaloid BBE medium borderline
Tpra03G0013300.2 Alkaloid BBE medium borderline
Tpra03G0013310.1 Alkaloid BBE medium borderline
Tpra03G0013320.1 Alkaloid BBE medium borderline
Tpra03G0013330.1 Alkaloid BBE medium borderline
Tpra03G0013340.1 Alkaloid BBE medium borderline
Tpra03G0032520.1 Alkaloid BBE medium borderline
Tpra06G0009830.1 Alkaloid BBE low borderline
Tpra06G0009830.2 Alkaloid BBE low borderline
Tpra06G0009830.3 Alkaloid BBE low borderline
TpraFKJA01000178.10007820.1 Alkaloid BBE medium borderline
TpraFKJA01000205.10012950.1 Alkaloid BBE medium borderline
TpraFKJA01000205.10012980.1 Alkaloid BBE medium borderline
TpraFKJA01000205.10012990.1 Alkaloid BBE medium borderline
TpraFKJA01000697.10065760.1 Alkaloid BBE medium borderline
TpraFKJA01000697.10065780.1 Alkaloid BBE medium borderline
TpraFKJA01001597.10103910.1 Alkaloid BBE medium borderline
TpraFKJA01005191.10123960.1 Alkaloid BBE medium borderline
TpraFKJA01009338.10136390.1 Alkaloid BBE medium borderline
TpraFKJA01021036.10160770.1 Alkaloid BBE medium borderline
TpraFKJA01037241.10182030.1 Alkaloid BBE medium borderline