PlantSME Plant secondary metabolism enzyme database

Trifolium pratense (trifolium_pratense)

Imported from atlas release summary for Trifolium pratense.

2106
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.3% Alkaloid pathway 23.98% Phenylpropanoid pathway 20.23% Flavonoid pathway 15.05% Rosmarinic acid pathway 8.12% Steroid pathway 5.32%
Family Distribution
C4H 7.26% C3'H/CYP98A 5.98% BAHD 4.91% UGT 4.39% CYP76 3.92% POD 3.88% IFS 3.68% 7DLGT 3.6%
Other Families 62.37%
More Families (96)
UFGT 188 3.53% T3O 176 3.3% 4CL 168 3.15% NMT 139 2.61% F3'H/CYP75B 120 2.25% F3H 120 2.25% BR6OX2/CYP85A2 113 2.12% DWF4/CYP90B1 107 2.01% CODM/T6ODM 104 1.95% CYP71 83 1.56% G8O/G8H 76 1.43% STR 72 1.35% SMT1/SMT2/SMT3 72 1.35% H6H 71 1.33% CAD 68 1.28% SGD 67 1.26% COMT 64 1.2% FNS 57 1.07% CAS 57 1.07% TRI/TRII 52 0.98% T16H 51 0.96% GS 49 0.92% IFR 49 0.92% ANS/LDOX 48 0.9% PYKS 47 0.88% CSE 46 0.86% F5H/CYP84A 44 0.83% TPS 44 0.83% 7DLH 43 0.81% HCT 43 0.81% LAC 37 0.69% CYP90D1 37 0.69% GES 36 0.68% PAL 36 0.68% 16OMT 35 0.66% RAS 35 0.66% F3'5'H/CYP75A 34 0.64% IO 29 0.54% CYP51G1 29 0.54% NCS 27 0.51% 8HGO 27 0.51% COR 27 0.51% ANR 25 0.47% PMT 24 0.45% CHS 24 0.45% BR6OX1/CYP85A1 24 0.45% SLS 22 0.41% CCR 22 0.41% BBE 21 0.39% TAT 20 0.38% ROT3/CYP90C1 19 0.36% CPD/CYP90A1 18 0.34% DFR 16 0.3% MPO 15 0.28% CYP719 14 0.26% CCoAOMT 14 0.26% HMGR 13 0.24% LAMT 12 0.23% ISY 11 0.21% FPPS 11 0.21% 6OMT_4OMT_SOMT 10 0.19% CNMT 9 0.17% CPR 9 0.17% SQE 9 0.17% DXS 9 0.17% XMT_MXMT_DXMT 8 0.15% HPPR 8 0.15% SQS/FDFT1 8 0.15% DET2 8 0.15% AACT 8 0.15% CYP80B1 7 0.13% CHI 7 0.13% ODC 6 0.11% FLS 6 0.11% MVD 6 0.11% MVK 6 0.11% GGPPS 5 0.09% TDC 4 0.08% SMO1/SMO2 4 0.08% MCT/IspD 4 0.08% TYDC_DDC 3 0.06% DWF5 3 0.06% DWF1 3 0.06% CPI1 3 0.06% HYD1 3 0.06% HDR/IspH 3 0.06% ADC 2 0.04% HMGS 2 0.04% DXR 2 0.04% IDI 2 0.04% FK 1 0.02% DWF7 1 0.02% PMK 1 0.02% MDS/IspF 1 0.02% CMK/IspE 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 575 19 UGT (209) View species results
Alkaloid pathway 505 23 7DLGT (90) View species results
Phenylpropanoid pathway 426 13 POD (188) View species results
Flavonoid pathway 317 14 UFGT (181) View species results
Rosmarinic acid pathway 171 7 C4H (77) View species results
Steroid pathway 112 14 CAS (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2157 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHI
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Gene Pathway Family Confidence Status Best Target
Tpra01G0005730.1 Flavonoid CHI medium pass CHI__00012__sp_Q8H0G1_CFI2_LOTJA
Tpra01G0005740.1 Flavonoid CHI medium pass CHI__00009__sp_Q53B70_CF1B2_SOYBN
Tpra01G0019850.1 Flavonoid CHI medium pass CHI__00002__sp_A0A2U7XUH7_CHIL1_HUMLU
Tpra03G0025580.1 Flavonoid CHI medium pass CHI__00001__sp_A0A2U7XUE3_CHIL2_HUMLU
Tpra06G0017860.1 Flavonoid CHI medium pass CHI__00009__sp_Q53B70_CF1B2_SOYBN
Tpra06G0017870.1 Flavonoid CHI medium pass CHI__00005__sp_P28012_CFI1_MEDSA
Tpra07G0028100.1 Flavonoid CHI low borderline CHI__00009__sp_Q53B70_CF1B2_SOYBN