PlantSME Plant secondary metabolism enzyme database

Trifolium pratense (trifolium_pratense)

Imported from atlas release summary for Trifolium pratense.

2106
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 575 19 UGT (209) View species results
Alkaloid pathway 505 23 7DLGT (90) View species results
Phenylpropanoid pathway 426 13 POD (188) View species results
Flavonoid pathway 317 14 UFGT (181) View species results
Rosmarinic acid pathway 171 7 C4H (77) View species results
Steroid pathway 112 14 CAS (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2157 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: H6H
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Gene Pathway Family Confidence Status
Tpra01G0015210.1 Alkaloid H6H low borderline
Tpra01G0022470.1 Alkaloid H6H low borderline
Tpra01G0024110.1 Alkaloid H6H low borderline
Tpra02G0008000.1 Alkaloid H6H medium borderline
Tpra02G0020790.1 Alkaloid H6H medium borderline
Tpra02G0026080.1 Alkaloid H6H low borderline
Tpra02G0028990.1 Alkaloid H6H medium borderline
Tpra03G0001340.1 Alkaloid H6H low borderline
Tpra03G0001350.1 Alkaloid H6H low borderline
Tpra03G0008600.1 Alkaloid H6H low borderline
Tpra03G0009480.1 Alkaloid H6H medium borderline
Tpra03G0023840.1 Alkaloid H6H medium borderline
Tpra03G0025010.1 Alkaloid H6H medium pass
Tpra03G0031460.1 Alkaloid H6H low borderline
Tpra03G0032060.1 Alkaloid H6H low borderline
Tpra03G0032070.1 Alkaloid H6H low borderline
Tpra04G0009710.1 Alkaloid H6H low borderline
Tpra04G0009710.2 Alkaloid H6H low borderline
Tpra04G0016390.1 Alkaloid H6H low borderline
Tpra04G0025260.1 Alkaloid H6H medium pass
Tpra04G0025270.1 Alkaloid H6H low borderline
Tpra04G0026980.1 Alkaloid H6H medium borderline
Tpra04G0026990.1 Alkaloid H6H medium borderline
Tpra04G0028320.1 Alkaloid H6H low borderline
Tpra05G0001790.1 Alkaloid H6H low borderline
Tpra05G0011880.1 Alkaloid H6H low borderline
Tpra05G0011910.1 Alkaloid H6H medium borderline
Tpra06G0002920.1 Alkaloid H6H low borderline
Tpra06G0021850.1 Alkaloid H6H medium pass
Tpra06G0023750.1 Alkaloid H6H medium borderline
Tpra06G0025630.1 Alkaloid H6H medium borderline
Tpra06G0025650.1 Alkaloid H6H medium borderline
Tpra06G0025660.1 Alkaloid H6H medium borderline
Tpra07G0002540.1 Alkaloid H6H low borderline
Tpra07G0009250.1 Alkaloid H6H high pass
Tpra07G0009270.1 Alkaloid H6H medium borderline
Tpra07G0015200.1 Alkaloid H6H low borderline
TpraFKJA01000178.10007710.1 Alkaloid H6H low borderline
TpraFKJA01000201.10011850.1 Alkaloid H6H low borderline
TpraFKJA01000258.10019510.1 Alkaloid H6H medium borderline
TpraFKJA01000258.10019520.1 Alkaloid H6H medium pass
TpraFKJA01000258.10019520.2 Alkaloid H6H medium pass
TpraFKJA01000274.10021770.1 Alkaloid H6H medium borderline
TpraFKJA01000305.10025310.1 Alkaloid H6H low borderline
TpraFKJA01000307.10025660.1 Alkaloid H6H medium borderline
TpraFKJA01000324.10027480.1 Alkaloid H6H low borderline
TpraFKJA01000324.10027490.1 Alkaloid H6H low borderline
TpraFKJA01000337.10029380.1 Alkaloid H6H low borderline
TpraFKJA01000358.10031310.1 Alkaloid H6H low borderline
TpraFKJA01000448.10040560.1 Alkaloid H6H high pass