PlantSME Plant secondary metabolism enzyme database

Trifolium pratense (trifolium_pratense)

Imported from atlas release summary for Trifolium pratense.

2510
Candidate Protein Records
2106
Pathway-Level Records
5331
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 575 19 UGT (209) View species results
Alkaloid pathway 505 23 7DLGT (90) View species results
Phenylpropanoid pathway 426 13 POD (188) View species results
Flavonoid pathway 317 14 UFGT (181) View species results
Rosmarinic acid pathway 171 7 C4H (77) View species results
Steroid pathway 112 14 CAS (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 2157 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
TpraFKJA01017502.10154780.1 Alkaloid NMT medium pass
TpraFKJA01018673.10156680.1 Alkaloid NMT medium borderline
TpraFKJA01022239.10162540.1 Alkaloid NMT medium borderline
TpraFKJA01022907.10163480.1 Alkaloid NMT medium pass
TpraFKJA01027908.10170830.1 Alkaloid NMT medium pass
TpraFKJA01038539.10183330.1 Alkaloid NMT medium borderline
Tpra04G0009030.1 Alkaloid ODC medium pass
Tpra07G0006310.1 Alkaloid ODC medium pass
Tpra07G0006320.1 Alkaloid ODC medium pass
TpraFKJA01000886.10079970.1 Alkaloid ODC medium pass
TpraFKJA01000886.10079980.1 Alkaloid ODC medium pass
TpraFKJA01014080.10148000.1 Alkaloid ODC medium pass
Tpra01G0000860.1 Alkaloid PMT medium pass
Tpra01G0019540.1 Alkaloid PMT medium borderline
Tpra01G0020850.1 Alkaloid PMT medium pass
Tpra02G0009500.1 Alkaloid PMT medium borderline
Tpra02G0021920.1 Alkaloid PMT medium borderline
Tpra02G0036890.1 Alkaloid PMT medium pass
Tpra03G0001640.1 Alkaloid PMT low borderline
Tpra03G0015370.1 Alkaloid PMT low borderline
Tpra04G0023730.1 Alkaloid PMT low borderline
Tpra06G0004520.1 Alkaloid PMT medium pass
Tpra06G0004530.1 Alkaloid PMT medium pass
Tpra07G0009790.1 Alkaloid PMT medium pass
Tpra07G0011700.1 Alkaloid PMT low borderline
TpraFKJA01000260.10019790.1 Alkaloid PMT low borderline
TpraFKJA01000305.10025430.1 Alkaloid PMT low borderline
TpraFKJA01000432.10038950.1 Alkaloid PMT medium borderline
TpraFKJA01000479.10044460.1 Alkaloid PMT low borderline
TpraFKJA01000479.10044470.1 Alkaloid PMT medium pass
TpraFKJA01000479.10044480.1 Alkaloid PMT medium pass
TpraFKJA01000479.10044490.1 Alkaloid PMT low borderline
TpraFKJA01001203.10095150.1 Alkaloid PMT medium borderline
TpraFKJA01004482.10121270.1 Alkaloid PMT medium borderline
TpraFKJA01004878.10122810.1 Alkaloid PMT medium pass
TpraFKJA01006367.10128080.1 Alkaloid PMT low borderline
Tpra01G0006510.1 Alkaloid PYKS low borderline
Tpra01G0009870.1 Alkaloid PYKS low borderline
Tpra01G0009880.1 Alkaloid PYKS low borderline
Tpra01G0009890.1 Alkaloid PYKS low borderline
Tpra01G0014030.1 Alkaloid PYKS low borderline
Tpra02G0017010.1 Alkaloid PYKS low borderline
Tpra02G0027840.1 Alkaloid PYKS low borderline
Tpra02G0035960.1 Alkaloid PYKS high pass
Tpra02G0035970.1 Alkaloid PYKS high pass
Tpra02G0036060.1 Alkaloid PYKS high pass
Tpra02G0036080.1 Alkaloid PYKS high pass
Tpra02G0036090.1 Alkaloid PYKS medium pass
Tpra03G0022700.1 Alkaloid PYKS high pass
Tpra03G0022720.1 Alkaloid PYKS medium pass