Trifolium pratense (trifolium_pratense)
Imported from atlas release summary for Trifolium pratense.
2510
Candidate Protein Records
2106
Pathway-Level Records
5331
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5331
Family-Level Calls
C4H
7.26%
C3'H/CYP98A
5.98%
BAHD
4.91%
UGT
4.39%
CYP76
3.92%
POD
3.88%
IFS
3.68%
7DLGT
3.6%
Other Families
62.37%
More Families (96)
UFGT
188
3.53%
T3O
176
3.3%
4CL
168
3.15%
NMT
139
2.61%
F3'H/CYP75B
120
2.25%
F3H
120
2.25%
BR6OX2/CYP85A2
113
2.12%
DWF4/CYP90B1
107
2.01%
CODM/T6ODM
104
1.95%
CYP71
83
1.56%
G8O/G8H
76
1.43%
STR
72
1.35%
SMT1/SMT2/SMT3
72
1.35%
H6H
71
1.33%
CAD
68
1.28%
SGD
67
1.26%
COMT
64
1.2%
FNS
57
1.07%
CAS
57
1.07%
TRI/TRII
52
0.98%
T16H
51
0.96%
GS
49
0.92%
IFR
49
0.92%
ANS/LDOX
48
0.9%
PYKS
47
0.88%
CSE
46
0.86%
F5H/CYP84A
44
0.83%
TPS
44
0.83%
7DLH
43
0.81%
HCT
43
0.81%
LAC
37
0.69%
CYP90D1
37
0.69%
GES
36
0.68%
PAL
36
0.68%
16OMT
35
0.66%
RAS
35
0.66%
F3'5'H/CYP75A
34
0.64%
IO
29
0.54%
CYP51G1
29
0.54%
NCS
27
0.51%
8HGO
27
0.51%
COR
27
0.51%
ANR
25
0.47%
PMT
24
0.45%
CHS
24
0.45%
BR6OX1/CYP85A1
24
0.45%
SLS
22
0.41%
CCR
22
0.41%
BBE
21
0.39%
TAT
20
0.38%
ROT3/CYP90C1
19
0.36%
CPD/CYP90A1
18
0.34%
DFR
16
0.3%
MPO
15
0.28%
CYP719
14
0.26%
CCoAOMT
14
0.26%
HMGR
13
0.24%
LAMT
12
0.23%
ISY
11
0.21%
FPPS
11
0.21%
6OMT_4OMT_SOMT
10
0.19%
CNMT
9
0.17%
CPR
9
0.17%
SQE
9
0.17%
DXS
9
0.17%
XMT_MXMT_DXMT
8
0.15%
HPPR
8
0.15%
SQS/FDFT1
8
0.15%
DET2
8
0.15%
AACT
8
0.15%
CYP80B1
7
0.13%
CHI
7
0.13%
ODC
6
0.11%
FLS
6
0.11%
MVD
6
0.11%
MVK
6
0.11%
GGPPS
5
0.09%
TDC
4
0.08%
SMO1/SMO2
4
0.08%
MCT/IspD
4
0.08%
TYDC_DDC
3
0.06%
DWF5
3
0.06%
DWF1
3
0.06%
CPI1
3
0.06%
HYD1
3
0.06%
HDR/IspH
3
0.06%
ADC
2
0.04%
HMGS
2
0.04%
DXR
2
0.04%
IDI
2
0.04%
FK
1
0.02%
DWF7
1
0.02%
PMK
1
0.02%
MDS/IspF
1
0.02%
CMK/IspE
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 575 | 19 | UGT (209) | View species results |
| Alkaloid pathway | 505 | 23 | 7DLGT (90) | View species results |
| Phenylpropanoid pathway | 426 | 13 | POD (188) | View species results |
| Flavonoid pathway | 317 | 14 | UFGT (181) | View species results |
| Rosmarinic acid pathway | 171 | 7 | C4H (77) | View species results |
| Steroid pathway | 112 | 14 | CAS (45) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 2157 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 340 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Tpra03G0029700.1 | Alkaloid | PYKS | high | pass |
| Tpra03G0029720.1 | Alkaloid | PYKS | high | pass |
| Tpra04G0020680.1 | Alkaloid | PYKS | low | borderline |
| Tpra04G0022930.1 | Alkaloid | PYKS | high | pass |
| Tpra04G0029780.1 | Alkaloid | PYKS | low | borderline |
| Tpra05G0009390.1 | Alkaloid | PYKS | low | borderline |
| Tpra05G0011300.1 | Alkaloid | PYKS | high | pass |
| Tpra05G0011570.1 | Alkaloid | PYKS | low | borderline |
| Tpra05G0015530.1 | Alkaloid | PYKS | low | borderline |
| Tpra06G0021800.1 | Alkaloid | PYKS | high | pass |
| Tpra07G0018590.1 | Alkaloid | PYKS | low | borderline |
| Tpra07G0024340.1 | Alkaloid | PYKS | low | borderline |
| Tpra07G0024640.1 | Alkaloid | PYKS | low | borderline |
| TpraFKJA01000242.10018140.1 | Alkaloid | PYKS | medium | pass |
| TpraFKJA01000260.10019650.1 | Alkaloid | PYKS | low | borderline |
| TpraFKJA01000260.10019670.1 | Alkaloid | PYKS | low | borderline |
| TpraFKJA01000321.10027080.1 | Alkaloid | PYKS | low | borderline |
| TpraFKJA01000331.10028270.1 | Alkaloid | PYKS | high | pass |
| TpraFKJA01000476.10044100.1 | Alkaloid | PYKS | medium | pass |
| TpraFKJA01000476.10044110.1 | Alkaloid | PYKS | high | pass |
| TpraFKJA01000476.10044120.1 | Alkaloid | PYKS | medium | pass |
| TpraFKJA01000688.10065160.1 | Alkaloid | PYKS | low | borderline |
| TpraFKJA01000854.10077690.1 | Alkaloid | PYKS | low | borderline |
| TpraFKJA01000880.10079510.1 | Alkaloid | PYKS | low | borderline |
| TpraFKJA01001000.10086140.1 | Alkaloid | PYKS | low | borderline |
| TpraFKJA01001566.10103530.1 | Alkaloid | PYKS | medium | pass |
| TpraFKJA01002037.10108530.1 | Alkaloid | PYKS | medium | pass |
| TpraFKJA01002062.10108830.1 | Alkaloid | PYKS | high | pass |
| TpraFKJA01003778.10118580.1 | Alkaloid | PYKS | medium | pass |
| TpraFKJA01005025.10123370.1 | Alkaloid | PYKS | low | borderline |
| TpraFKJA01010022.10138080.1 | Alkaloid | PYKS | high | pass |
| TpraFKJA01010482.10139370.1 | Alkaloid | PYKS | medium | pass |
| TpraFKJA01026786.10169270.1 | Alkaloid | PYKS | medium | pass |
| Tpra01G0013120.1 | Alkaloid | SGD | low | borderline |
| Tpra01G0018600.1 | Alkaloid | SGD | low | borderline |
| Tpra01G0030500.1 | Alkaloid | SGD | low | borderline |
| Tpra01G0030510.1 | Alkaloid | SGD | low | borderline |
| Tpra02G0019070.1 | Alkaloid | SGD | medium | pass |
| Tpra02G0026060.1 | Alkaloid | SGD | low | borderline |
| Tpra02G0029580.1 | Alkaloid | SGD | medium | borderline |
| Tpra02G0031660.1 | Alkaloid | SGD | medium | pass |
| Tpra03G0008240.1 | Alkaloid | SGD | medium | pass |
| Tpra03G0008260.1 | Alkaloid | SGD | medium | pass |
| Tpra03G0008270.1 | Alkaloid | SGD | medium | pass |
| Tpra03G0018920.1 | Alkaloid | SGD | medium | pass |
| Tpra03G0018930.1 | Alkaloid | SGD | medium | pass |
| Tpra03G0028140.1 | Alkaloid | SGD | medium | pass |
| Tpra03G0033870.1 | Alkaloid | SGD | medium | pass |
| Tpra03G0033880.1 | Alkaloid | SGD | medium | pass |
| Tpra03G0033890.1 | Alkaloid | SGD | medium | pass |