PlantSME Plant secondary metabolism enzyme database

Trifolium pratense (trifolium_pratense)

Imported from atlas release summary for Trifolium pratense.

2106
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 575 19 UGT (209) View species results
Alkaloid pathway 505 23 7DLGT (90) View species results
Phenylpropanoid pathway 426 13 POD (188) View species results
Flavonoid pathway 317 14 UFGT (181) View species results
Rosmarinic acid pathway 171 7 C4H (77) View species results
Steroid pathway 112 14 CAS (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2157 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 340 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Tpra03G0028130.1 Rosmarinic Acid C4H medium pass
Tpra03G0030070.1 Rosmarinic Acid C4H low borderline
Tpra03G0030080.1 Rosmarinic Acid C4H low borderline
Tpra03G0030160.1 Rosmarinic Acid C4H low borderline
Tpra03G0030170.1 Rosmarinic Acid C4H medium pass
Tpra03G0033570.1 Rosmarinic Acid C4H low borderline
Tpra03G0033580.1 Rosmarinic Acid C4H low borderline
Tpra04G0000630.1 Rosmarinic Acid C4H low borderline
Tpra04G0000640.1 Rosmarinic Acid C4H medium pass
Tpra04G0000700.1 Rosmarinic Acid C4H low borderline
Tpra04G0000710.1 Rosmarinic Acid C4H low borderline
Tpra04G0000720.1 Rosmarinic Acid C4H low borderline
Tpra04G0000730.1 Rosmarinic Acid C4H low borderline
Tpra04G0001580.1 Rosmarinic Acid C4H low borderline
Tpra04G0005900.1 Rosmarinic Acid C4H low borderline
Tpra04G0007230.1 Rosmarinic Acid C4H low borderline
Tpra04G0012430.1 Rosmarinic Acid C4H medium pass
Tpra04G0012440.1 Rosmarinic Acid C4H low borderline
Tpra04G0015120.1 Rosmarinic Acid C4H low borderline
Tpra04G0016290.1 Rosmarinic Acid C4H low borderline
Tpra04G0016300.1 Rosmarinic Acid C4H low borderline
Tpra04G0023130.1 Rosmarinic Acid C4H medium pass
Tpra04G0026620.1 Rosmarinic Acid C4H low borderline
Tpra04G0030690.1 Rosmarinic Acid C4H low borderline
Tpra04G0030700.1 Rosmarinic Acid C4H low borderline
Tpra04G0030710.1 Rosmarinic Acid C4H medium pass
Tpra04G0030720.1 Rosmarinic Acid C4H low borderline
Tpra04G0030740.1 Rosmarinic Acid C4H medium pass
Tpra04G0030750.1 Rosmarinic Acid C4H low borderline
Tpra04G0031110.1 Rosmarinic Acid C4H medium pass
Tpra05G0001140.1 Rosmarinic Acid C4H low borderline
Tpra05G0004080.1 Rosmarinic Acid C4H low borderline
Tpra05G0004650.1 Rosmarinic Acid C4H low borderline
Tpra05G0006850.1 Rosmarinic Acid C4H medium pass
Tpra05G0006870.1 Rosmarinic Acid C4H low borderline
Tpra05G0006880.1 Rosmarinic Acid C4H low borderline
Tpra05G0006890.1 Rosmarinic Acid C4H medium pass
Tpra05G0006900.1 Rosmarinic Acid C4H low borderline
Tpra05G0008390.1 Rosmarinic Acid C4H low borderline
Tpra05G0012010.1 Rosmarinic Acid C4H low borderline
Tpra05G0012890.1 Rosmarinic Acid C4H low borderline
Tpra06G0000090.1 Rosmarinic Acid C4H low borderline
Tpra06G0000100.1 Rosmarinic Acid C4H low borderline
Tpra06G0008820.1 Rosmarinic Acid C4H medium pass
Tpra06G0008840.1 Rosmarinic Acid C4H medium pass
Tpra06G0008850.1 Rosmarinic Acid C4H low borderline
Tpra06G0008860.1 Rosmarinic Acid C4H low borderline
Tpra06G0009050.1 Rosmarinic Acid C4H low borderline
Tpra06G0009060.1 Rosmarinic Acid C4H medium pass
Tpra06G0009170.1 Rosmarinic Acid C4H low borderline