PlantSME Plant secondary metabolism enzyme database

Abies alba (abies_alba)

Imported from atlas release summary for Abies alba.

2579
Candidate Protein Records
1885
Pathway-Level Records
4430
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Current group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 27.16% Phenylpropanoid pathway 26.58% Alkaloid pathway 18.46% Flavonoid pathway 13.58% Rosmarinic acid pathway 9.39% Steroid pathway 4.83%
Family Distribution
4CL 7.34% BAHD 6.41% C4H 5.35% POD 5.12% C3'H/CYP98A 3.95% CYP76 3.7% UGT 3.59% F3H 3.05%
Other Families 61.49%
More Families (95)
NMT 131 2.96% 7DLGT 101 2.28% IFS 101 2.28% DWF4/CYP90B1 90 2.03% IFR 89 2.01% H6H 87 1.96% T3O 74 1.67% F3'H/CYP75B 74 1.67% COMT 69 1.56% CODM/T6ODM 68 1.53% TRI/TRII 66 1.49% G8O/G8H 66 1.49% UFGT 64 1.44% CNMT 63 1.42% CSE 61 1.38% STR 59 1.33% BR6OX2/CYP85A2 58 1.31% GS 51 1.15% F3'5'H/CYP75A 51 1.15% PYKS 48 1.08% HMGR 45 1.02% RAS 44 0.99% SMT1/SMT2/SMT3 44 0.99% PAL 42 0.95% HCT 42 0.95% IO 40 0.9% T16H 39 0.88% CHS 37 0.84% LAMT 33 0.74% FNS 31 0.7% NCS 30 0.68% CCR 30 0.68% ANR 29 0.65% CAD 29 0.65% CYP71 29 0.65% PMT 28 0.63% LAC 28 0.63% CYP90D1 27 0.61% XMT_MXMT_DXMT 26 0.59% CCoAOMT 26 0.59% F5H/CYP84A 26 0.59% CAS 26 0.59% ANS/LDOX 25 0.56% MPO 24 0.54% CYP80F1 23 0.52% TAT 23 0.52% 16OMT 22 0.5% CYP80B1 21 0.47% CYP719 19 0.43% CPD/CYP90A1 19 0.43% GGPPS 18 0.41% BR6OX1/CYP85A1 17 0.38% SGD 16 0.36% DFR 15 0.34% 7DLH 14 0.32% ADC 14 0.32% SQE 14 0.32% DET2 13 0.29% FPPS 13 0.29% CPR 12 0.27% SLS 11 0.25% FLS 11 0.25% CYP51G1 11 0.25% ROT3/CYP90C1 11 0.25% 6OMT_4OMT_SOMT 10 0.23% COR 10 0.23% HPPR 9 0.2% TPS 9 0.2% AACT 9 0.2% DXS 9 0.2% BBE 8 0.18% SQS/FDFT1 8 0.18% GPPS 8 0.18% PMK 8 0.18% MVK 7 0.16% DWF1 6 0.14% HDS/IspG 6 0.14% HMGS 6 0.14% SMO1/SMO2 5 0.11% GES 4 0.09% CHI 4 0.09% HDR/IspH 4 0.09% 8HGO 3 0.07% CMK/IspE 3 0.07% IDI 3 0.07% MVD 3 0.07% MCT/IspD 3 0.07% TDC 2 0.05% HYD1 2 0.05% MDS/IspF 2 0.05% ISY 1 0.02% TYDC_DDC 1 0.02% FK 1 0.02% CPI1 1 0.02% DXR 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 512 18 BAHD (205) View species results
Phenylpropanoid pathway 501 12 POD (206) View species results
Alkaloid pathway 348 23 NMT (65) View species results
Flavonoid pathway 256 15 4CL (85) View species results
Rosmarinic acid pathway 177 7 4CL (85) View species results
Steroid pathway 91 12 SMT1/SMT2/SMT3 (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1397 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 370 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
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Protein/Isoform Record Pathway Family Confidence Status
Aalbaalba5_s008324030897240.2 Rosmarinic Acid C4H medium pass
Aalbaalba5_s008469660898800.1 Rosmarinic Acid C4H low borderline
Aalbaalba5_s009410760907520.1 Rosmarinic Acid C4H low borderline
Aalbaalba5_s013842990930170.1 Rosmarinic Acid C4H low borderline
Aalbaalba5_s014767290933190.1 Rosmarinic Acid C4H low borderline