PlantSME Plant secondary metabolism enzyme database

Abies alba (abies_alba)

Imported from atlas release summary for Abies alba.

1885
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 512 18 BAHD (205) View species results
Phenylpropanoid pathway 501 12 POD (206) View species results
Alkaloid pathway 348 23 NMT (65) View species results
Flavonoid pathway 256 15 4CL (85) View species results
Rosmarinic acid pathway 177 7 4CL (85) View species results
Steroid pathway 91 12 SMT1/SMT2/SMT3 (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1397 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 370 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status
Aalbaalba5_s000012040011070.1 Alkaloid PMT medium pass
Aalbaalba5_s000063060047290.1 Alkaloid PMT medium borderline
Aalbaalba5_s000089700064050.1 Alkaloid PMT low borderline
Aalbaalba5_s000139820091040.1 Alkaloid PMT medium borderline
Aalbaalba5_s000384990202980.1 Alkaloid PMT low borderline
Aalbaalba5_s000589060282360.1 Alkaloid PMT low borderline
Aalbaalba5_s000870710368560.1 Alkaloid PMT low borderline
Aalbaalba5_s000880550371490.1 Alkaloid PMT low borderline
Aalbaalba5_s000930170384850.1 Alkaloid PMT medium borderline
Aalbaalba5_s001089760426730.1 Alkaloid PMT low borderline
Aalbaalba5_s001092110427290.1 Alkaloid PMT low borderline
Aalbaalba5_s001447870505050.1 Alkaloid PMT medium borderline
Aalbaalba5_s001498420515520.1 Alkaloid PMT medium pass
Aalbaalba5_s001560360527300.1 Alkaloid PMT low borderline
Aalbaalba5_s001568220528880.1 Alkaloid PMT medium pass
Aalbaalba5_s001819380572670.1 Alkaloid PMT low borderline
Aalbaalba5_s002141460621090.1 Alkaloid PMT medium borderline
Aalbaalba5_s002212050630970.1 Alkaloid PMT low borderline
Aalbaalba5_s002365130649980.1 Alkaloid PMT low borderline
Aalbaalba5_s002962410711880.1 Alkaloid PMT medium pass
Aalbaalba5_s003075550721600.1 Alkaloid PMT low borderline
Aalbaalba5_s003159370728560.1 Alkaloid PMT medium borderline
Aalbaalba5_s003627210760670.1 Alkaloid PMT low borderline
Aalbaalba5_s003632100761000.1 Alkaloid PMT medium pass
Aalbaalba5_s004618320813390.1 Alkaloid PMT medium borderline
Aalbaalba5_s004704410816940.1 Alkaloid PMT low borderline
Aalbaalba5_s004841770822560.1 Alkaloid PMT medium borderline
Aalbaalba5_s004919330825820.1 Alkaloid PMT medium pass