Abies alba (abies_alba)
Imported from atlas release summary for Abies alba.
1885
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1885
Candidate Genes
4CL
7.34%
BAHD
6.41%
C4H
5.35%
POD
5.12%
C3'H/CYP98A
3.95%
CYP76
3.7%
UGT
3.59%
F3H
3.05%
Other Families
61.49%
More Families (95)
NMT
131
2.96%
7DLGT
101
2.28%
IFS
101
2.28%
DWF4/CYP90B1
90
2.03%
IFR
89
2.01%
H6H
87
1.96%
T3O
74
1.67%
F3'H/CYP75B
74
1.67%
COMT
69
1.56%
CODM/T6ODM
68
1.53%
TRI/TRII
66
1.49%
G8O/G8H
66
1.49%
UFGT
64
1.44%
CNMT
63
1.42%
CSE
61
1.38%
STR
59
1.33%
BR6OX2/CYP85A2
58
1.31%
GS
51
1.15%
F3'5'H/CYP75A
51
1.15%
PYKS
48
1.08%
HMGR
45
1.02%
RAS
44
0.99%
SMT1/SMT2/SMT3
44
0.99%
PAL
42
0.95%
HCT
42
0.95%
IO
40
0.9%
T16H
39
0.88%
CHS
37
0.84%
LAMT
33
0.74%
FNS
31
0.7%
NCS
30
0.68%
CCR
30
0.68%
ANR
29
0.65%
CAD
29
0.65%
CYP71
29
0.65%
PMT
28
0.63%
LAC
28
0.63%
CYP90D1
27
0.61%
XMT_MXMT_DXMT
26
0.59%
CCoAOMT
26
0.59%
F5H/CYP84A
26
0.59%
CAS
26
0.59%
ANS/LDOX
25
0.56%
MPO
24
0.54%
CYP80F1
23
0.52%
TAT
23
0.52%
16OMT
22
0.5%
CYP80B1
21
0.47%
CYP719
19
0.43%
CPD/CYP90A1
19
0.43%
GGPPS
18
0.41%
BR6OX1/CYP85A1
17
0.38%
SGD
16
0.36%
DFR
15
0.34%
7DLH
14
0.32%
ADC
14
0.32%
SQE
14
0.32%
DET2
13
0.29%
FPPS
13
0.29%
CPR
12
0.27%
SLS
11
0.25%
FLS
11
0.25%
CYP51G1
11
0.25%
ROT3/CYP90C1
11
0.25%
6OMT_4OMT_SOMT
10
0.23%
COR
10
0.23%
HPPR
9
0.2%
TPS
9
0.2%
AACT
9
0.2%
DXS
9
0.2%
BBE
8
0.18%
SQS/FDFT1
8
0.18%
GPPS
8
0.18%
PMK
8
0.18%
MVK
7
0.16%
DWF1
6
0.14%
HDS/IspG
6
0.14%
HMGS
6
0.14%
SMO1/SMO2
5
0.11%
GES
4
0.09%
CHI
4
0.09%
HDR/IspH
4
0.09%
8HGO
3
0.07%
CMK/IspE
3
0.07%
IDI
3
0.07%
MVD
3
0.07%
MCT/IspD
3
0.07%
TDC
2
0.05%
HYD1
2
0.05%
MDS/IspF
2
0.05%
ISY
1
0.02%
TYDC_DDC
1
0.02%
FK
1
0.02%
CPI1
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 512 | 18 | BAHD (205) | View species results |
| Phenylpropanoid pathway | 501 | 12 | POD (206) | View species results |
| Alkaloid pathway | 348 | 23 | NMT (65) | View species results |
| Flavonoid pathway | 256 | 15 | 4CL (85) | View species results |
| Rosmarinic acid pathway | 177 | 7 | 4CL (85) | View species results |
| Steroid pathway | 91 | 12 | SMT1/SMT2/SMT3 (30) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1397 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 370 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Aalbaalba5_s001426780500770.1 | Rosmarinic Acid | CPR | medium | pass |
| Aalbaalba5_s001778200565900.1 | Rosmarinic Acid | CPR | medium | pass |
| Aalbaalba5_s001778200565910.1 | Rosmarinic Acid | CPR | medium | pass |
| Aalbaalba5_s001844230576780.1 | Rosmarinic Acid | CPR | medium | pass |
| Aalbaalba5_s003406890746880.1 | Rosmarinic Acid | CPR | medium | pass |
| Aalbaalba5_s005296820839860.1 | Rosmarinic Acid | CPR | low | borderline |
| Aalbaalba5_s008896500903390.1 | Rosmarinic Acid | CPR | low | borderline |
| Aalbaalba5_s000230930135980.1 | Rosmarinic Acid | HPPR | medium | pass |
| Aalbaalba5_s000558860272040.1 | Rosmarinic Acid | HPPR | medium | pass |
| Aalbaalba5_s000558860272040.2 | Rosmarinic Acid | HPPR | medium | pass |
| Aalbaalba5_s000639460299580.1 | Rosmarinic Acid | HPPR | medium | pass |
| Aalbaalba5_s000665000307400.1 | Rosmarinic Acid | HPPR | low | borderline |
| Aalbaalba5_s001582260531320.1 | Rosmarinic Acid | HPPR | medium | pass |
| Aalbaalba5_s002462010661780.1 | Rosmarinic Acid | HPPR | medium | pass |
| Aalbaalba5_s002493540664930.1 | Rosmarinic Acid | HPPR | medium | pass |
| Aalbaalba5_s003188490730760.1 | Rosmarinic Acid | HPPR | medium | pass |
| Aalbaalba5_s000096760068470.1 | Rosmarinic Acid | PAL | high | pass |
| Aalbaalba5_s000110210075580.1 | Rosmarinic Acid | PAL | high | pass |
| Aalbaalba5_s000142160092290.1 | Rosmarinic Acid | PAL | high | pass |
| Aalbaalba5_s000450300230830.1 | Rosmarinic Acid | PAL | high | pass |
| Aalbaalba5_s001021110409000.1 | Rosmarinic Acid | PAL | high | pass |
| Aalbaalba5_s001051440416420.1 | Rosmarinic Acid | PAL | high | pass |
| Aalbaalba5_s001190960450300.1 | Rosmarinic Acid | PAL | high | pass |
| Aalbaalba5_s001614970537650.1 | Rosmarinic Acid | PAL | high | pass |
| Aalbaalba5_s001833620575110.1 | Rosmarinic Acid | PAL | high | pass |
| Aalbaalba5_s004882680824470.1 | Rosmarinic Acid | PAL | medium | pass |
| Aalbaalba5_s005106700833560.1 | Rosmarinic Acid | PAL | medium | pass |
| Aalbaalba5_s005160220835410.1 | Rosmarinic Acid | PAL | medium | pass |
| Aalbaalba5_s005606150849700.1 | Rosmarinic Acid | PAL | medium | pass |
| Aalbaalba5_s005773990854150.1 | Rosmarinic Acid | PAL | medium | pass |
| Aalbaalba5_s000005250004900.1 | Rosmarinic Acid | RAS | medium | pass |
| Aalbaalba5_s000005250004900.2 | Rosmarinic Acid | RAS | medium | pass |
| Aalbaalba5_s000012040011080.1 | Rosmarinic Acid | RAS | medium | pass |
| Aalbaalba5_s000036940030450.1 | Rosmarinic Acid | RAS | low | borderline |
| Aalbaalba5_s000083900060630.1 | Rosmarinic Acid | RAS | low | borderline |
| Aalbaalba5_s000089700064050.1 | Rosmarinic Acid | RAS | medium | pass |
| Aalbaalba5_s000092710065810.1 | Rosmarinic Acid | RAS | low | borderline |
| Aalbaalba5_s000168130106000.1 | Rosmarinic Acid | RAS | low | borderline |
| Aalbaalba5_s000314710172770.1 | Rosmarinic Acid | RAS | low | borderline |
| Aalbaalba5_s000317630174190.1 | Rosmarinic Acid | RAS | low | borderline |
| Aalbaalba5_s000354590189720.1 | Rosmarinic Acid | RAS | low | borderline |
| Aalbaalba5_s000384990202980.1 | Rosmarinic Acid | RAS | medium | pass |
| Aalbaalba5_s000455930233080.1 | Rosmarinic Acid | RAS | low | borderline |
| Aalbaalba5_s000523610259280.1 | Rosmarinic Acid | RAS | low | borderline |
| Aalbaalba5_s000603310287330.1 | Rosmarinic Acid | RAS | medium | pass |
| Aalbaalba5_s000629700296180.1 | Rosmarinic Acid | RAS | low | borderline |
| Aalbaalba5_s000632190296930.1 | Rosmarinic Acid | RAS | medium | pass |
| Aalbaalba5_s000675440310810.1 | Rosmarinic Acid | RAS | low | borderline |
| Aalbaalba5_s000863930366750.1 | Rosmarinic Acid | RAS | low | borderline |
| Aalbaalba5_s000979860398400.1 | Rosmarinic Acid | RAS | low | borderline |