PlantSME Plant secondary metabolism enzyme database

Archidium alternifolium (archidium_alternifolium)

Imported from atlas release summary for Archidium alternifolium.

891
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 29.07% Terpenoid pathway 21.32% Alkaloid pathway 18.07% Flavonoid pathway 15.15% Rosmarinic acid pathway 10.66% Steroid pathway 5.72%
Family Distribution
C4H 6.34% C3'H/CYP98A 5.95% PAL 5.47% CYP76 5.21% POD 4.73% BAHD 4.26% 4CL 4.04% NMT 3.17%
Other Families 60.83%
More Families (94)
IFS 73 3.17% BR6OX2/CYP85A2 59 2.56% STR 56 2.43% F3'H/CYP75B 51 2.21% IO 48 2.08% UFGT 48 2.08% DWF4/CYP90B1 48 2.08% UGT 46 2.0% 7DLGT 43 1.87% T3O 42 1.82% COMT 42 1.82% F3H 41 1.78% PYKS 39 1.69% 16OMT 39 1.69% IFR 37 1.61% GS 32 1.39% CHS 30 1.3% CODM/T6ODM 26 1.13% LAC 26 1.13% T16H 25 1.09% CAS 24 1.04% CYP71 24 1.04% F3'5'H/CYP75A 23 1.0% G8O/G8H 22 0.96% CAD 21 0.91% SMT1/SMT2/SMT3 21 0.91% TRI/TRII 18 0.78% H6H 17 0.74% HCT 15 0.65% CSE 14 0.61% COR 13 0.56% SLS 13 0.56% RAS 13 0.56% TPS 13 0.56% 7DLH 12 0.52% FNS 12 0.52% GES 11 0.48% ANR 10 0.43% 8HGO 9 0.39% CNMT 9 0.39% CHI 9 0.39% F5H/CYP84A 9 0.39% SQE 9 0.39% SGD 8 0.35% BBE 8 0.35% CYP80B1 8 0.35% DFR 8 0.35% CCR 8 0.35% CPD/CYP90A1 8 0.35% CYP90D1 8 0.35% TDC 7 0.3% LAMT 7 0.3% PMT 7 0.3% TAT 7 0.3% MPO 6 0.26% CPR 6 0.26% SQS/FDFT1 6 0.26% BR6OX1/CYP85A1 6 0.26% CYP51G1 6 0.26% AACT 6 0.26% FPPS 6 0.26% MVK 6 0.26% DET2 5 0.22% ROT3/CYP90C1 5 0.22% GGPPS 5 0.22% ISY 4 0.17% CYP719 4 0.17% DWF5 4 0.17% MCT/IspD 4 0.17% 6OMT_4OMT_SOMT 3 0.13% CCoAOMT 3 0.13% PMK 3 0.13% HMGR 3 0.13% IDI 3 0.13% MVD 3 0.13% HMGS 3 0.13% TYDC_DDC 2 0.09% ADC 2 0.09% DWF7 2 0.09% SMO1/SMO2 2 0.09% CPI1 2 0.09% MDS/IspF 2 0.09% HDS/IspG 2 0.09% NCS 1 0.04% FLS 1 0.04% ANS/LDOX 1 0.04% HPPR 1 0.04% DWF1 1 0.04% FK 1 0.04% HYD1 1 0.04% DXS 1 0.04% HDR/IspH 1 0.04% DXR 1 0.04% CMK/IspE 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 259 11 POD (97) View species results
Terpenoid pathway 190 20 BAHD (58) View species results
Alkaloid pathway 161 19 PYKS (29) View species results
Flavonoid pathway 135 10 PAL (38) View species results
Rosmarinic acid pathway 95 7 PAL (38) View species results
Steroid pathway 51 12 CAS (20) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 897 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 126 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COR
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Gene Pathway Family Confidence Status Best Target
Aaltescaffold_10001720 Alkaloid COR medium pass COR__00003__sp_Q9SQ68_COR13_PAPSO
Aaltescaffold_10001880 Alkaloid COR medium pass COR__00003__sp_Q9SQ68_COR13_PAPSO
Aaltescaffold_100095630 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
Aaltescaffold_10037090 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
Aaltescaffold_10039690 Alkaloid COR medium pass COR__00003__sp_Q9SQ68_COR13_PAPSO
Aaltescaffold_20213140 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
Aaltescaffold_30257060 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
Aaltescaffold_30310240 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
Aaltescaffold_60427520 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
Aaltescaffold_60437320 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
Aaltescaffold_70466150 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
Aaltescaffold_80467910 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
Aaltescaffold_80473760 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO