Archidium alternifolium (archidium_alternifolium)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Phenylpropanoid pathway 29.07% Terpenoid pathway 21.32% Alkaloid pathway 18.07% Flavonoid pathway 15.15% Rosmarinic acid pathway 10.66% Steroid pathway 5.72%

Family Distribution

891 Candidate Genes

C4H 6.34% C3'H/CYP98A 5.95% PAL 5.47% CYP76 5.21% POD 4.73% BAHD 4.26% 4CL 4.04% NMT 3.17%

Other Families 60.83%

More Families (94)

IFS 73 3.17% BR6OX2/CYP85A2 59 2.56% STR 56 2.43% F3'H/CYP75B 51 2.21% IO 48 2.08% UFGT 48 2.08% DWF4/CYP90B1 48 2.08% UGT 46 2.0% 7DLGT 43 1.87% T3O 42 1.82% COMT 42 1.82% F3H 41 1.78% PYKS 39 1.69% 16OMT 39 1.69% IFR 37 1.61% GS 32 1.39% CHS 30 1.3% CODM/T6ODM 26 1.13% LAC 26 1.13% T16H 25 1.09% CAS 24 1.04% CYP71 24 1.04% F3'5'H/CYP75A 23 1.0% G8O/G8H 22 0.96% CAD 21 0.91% SMT1/SMT2/SMT3 21 0.91% TRI/TRII 18 0.78% H6H 17 0.74% HCT 15 0.65% CSE 14 0.61% COR 13 0.56% SLS 13 0.56% RAS 13 0.56% TPS 13 0.56% 7DLH 12 0.52% FNS 12 0.52% GES 11 0.48% ANR 10 0.43% 8HGO 9 0.39% CNMT 9 0.39% CHI 9 0.39% F5H/CYP84A 9 0.39% SQE 9 0.39% SGD 8 0.35% BBE 8 0.35% CYP80B1 8 0.35% DFR 8 0.35% CCR 8 0.35% CPD/CYP90A1 8 0.35% CYP90D1 8 0.35% TDC 7 0.3% LAMT 7 0.3% PMT 7 0.3% TAT 7 0.3% MPO 6 0.26% CPR 6 0.26% SQS/FDFT1 6 0.26% BR6OX1/CYP85A1 6 0.26% CYP51G1 6 0.26% AACT 6 0.26% FPPS 6 0.26% MVK 6 0.26% DET2 5 0.22% ROT3/CYP90C1 5 0.22% GGPPS 5 0.22% ISY 4 0.17% CYP719 4 0.17% DWF5 4 0.17% MCT/IspD 4 0.17% 6OMT_4OMT_SOMT 3 0.13% CCoAOMT 3 0.13% PMK 3 0.13% HMGR 3 0.13% IDI 3 0.13% MVD 3 0.13% HMGS 3 0.13% TYDC_DDC 2 0.09% ADC 2 0.09% DWF7 2 0.09% SMO1/SMO2 2 0.09% CPI1 2 0.09% MDS/IspF 2 0.09% HDS/IspG 2 0.09% NCS 1 0.04% FLS 1 0.04% ANS/LDOX 1 0.04% HPPR 1 0.04% DWF1 1 0.04% FK 1 0.04% HYD1 1 0.04% DXS 1 0.04% HDR/IspH 1 0.04% DXR 1 0.04% CMK/IspE 1 0.04%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Phenylpropanoid pathway	259	11	POD (97)	View species results
Terpenoid pathway	190	20	BAHD (58)	View species results
Alkaloid pathway	161	19	PYKS (29)	View species results
Flavonoid pathway	135	10	PAL (38)	View species results
Rosmarinic acid pathway	95	7	PAL (38)	View species results
Steroid pathway	51	12	CAS (20)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	23	897	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	126	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: SMT1/SMT2/SMT3

Gene	Pathway	Family	Confidence	Status	Best Target
Aaltescaffold_100083330	Steroid	SMT1/SMT2/SMT3	low	borderline	SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Aaltescaffold_100091120	Steroid	SMT1/SMT2/SMT3	low	borderline	SMT1_SMT2_SMT3__00006__sp_Q9LM02_SMT1_ARATH
Aaltescaffold_100105820	Steroid	SMT1/SMT2/SMT3	low	borderline	SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Aaltescaffold_10032900	Steroid	SMT1/SMT2/SMT3	low	borderline	SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Aaltescaffold_10034200	Steroid	SMT1/SMT2/SMT3	medium	pass	SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Aaltescaffold_10036420	Steroid	SMT1/SMT2/SMT3	low	borderline	SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Aaltescaffold_20217210	Steroid	SMT1/SMT2/SMT3	low	borderline	SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Aaltescaffold_20233250	Steroid	SMT1/SMT2/SMT3	medium	pass	SMT1_SMT2_SMT3__00006__sp_Q9LM02_SMT1_ARATH
Aaltescaffold_20237310	Steroid	SMT1/SMT2/SMT3	medium	pass	SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Aaltescaffold_30271970	Steroid	SMT1/SMT2/SMT3	medium	pass	SMT1_SMT2_SMT3__00004__sp_Q4VNK0_SMTA_BRAOT
Aaltescaffold_30290810	Steroid	SMT1/SMT2/SMT3	low	borderline	SMT1_SMT2_SMT3__00006__sp_Q9LM02_SMT1_ARATH
Aaltescaffold_40324670	Steroid	SMT1/SMT2/SMT3	low	borderline	SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Aaltescaffold_40331160	Steroid	SMT1/SMT2/SMT3	low	borderline	SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Aaltescaffold_40331680	Steroid	SMT1/SMT2/SMT3	medium	pass	SMT1_SMT2_SMT3__00006__sp_Q9LM02_SMT1_ARATH
Aaltescaffold_80471090	Steroid	SMT1/SMT2/SMT3	low	borderline	SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Aaltescaffold_90512560	Steroid	SMT1/SMT2/SMT3	medium	pass	SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Aaltescaffold_90517060	Steroid	SMT1/SMT2/SMT3	low	borderline	SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Aaltescaffold_90524820	Steroid	SMT1/SMT2/SMT3	medium	pass	SMT1_SMT2_SMT3__00006__sp_Q9LM02_SMT1_ARATH
Aaltescaffold_90530700	Steroid	SMT1/SMT2/SMT3	low	borderline	SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Aaltescaffold_90532440	Steroid	SMT1/SMT2/SMT3	low	borderline	SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
Aaltescaffold_90532580	Steroid	SMT1/SMT2/SMT3	low	borderline	SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH