PlantSME Plant secondary metabolism enzyme database

Archidium alternifolium (archidium_alternifolium)

Imported from atlas release summary for Archidium alternifolium.

891
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 259 11 POD (97) View species results
Terpenoid pathway 190 20 BAHD (58) View species results
Alkaloid pathway 161 19 PYKS (29) View species results
Flavonoid pathway 135 10 PAL (38) View species results
Rosmarinic acid pathway 95 7 PAL (38) View species results
Steroid pathway 51 12 CAS (20) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 897 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 126 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status Best Target
Aaltescaffold_100082420 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
Aaltescaffold_100083690 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Aaltescaffold_100083800 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
Aaltescaffold_100099150 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
Aaltescaffold_100099170 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
Aaltescaffold_100099180 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
Aaltescaffold_10010570 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Aaltescaffold_10010880 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Aaltescaffold_20186070 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
Aaltescaffold_20186080 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
Aaltescaffold_20189580 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Aaltescaffold_20215150 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Aaltescaffold_20237090 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Aaltescaffold_40353090 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Aaltescaffold_50392830 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Aaltescaffold_80483770 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
Aaltescaffold_80483890 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
Aaltescaffold_80483900 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Aaltescaffold_80494730 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Aaltescaffold_80494740 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Aaltescaffold_90509400 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
Aaltescaffold_90514050 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Aaltescaffold_90514130 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Aaltescaffold_90515100 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
Aaltescaffold_90524580 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
Aaltescaffold_90525220 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH