Archidium alternifolium (archidium_alternifolium)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Phenylpropanoid pathway 29.07% Terpenoid pathway 21.32% Alkaloid pathway 18.07% Flavonoid pathway 15.15% Rosmarinic acid pathway 10.66% Steroid pathway 5.72%

Family Distribution

891 Candidate Genes

C4H 6.34% C3'H/CYP98A 5.95% PAL 5.47% CYP76 5.21% POD 4.73% BAHD 4.26% 4CL 4.04% NMT 3.17%

Other Families 60.83%

More Families (94)

IFS 73 3.17% BR6OX2/CYP85A2 59 2.56% STR 56 2.43% F3'H/CYP75B 51 2.21% IO 48 2.08% UFGT 48 2.08% DWF4/CYP90B1 48 2.08% UGT 46 2.0% 7DLGT 43 1.87% T3O 42 1.82% COMT 42 1.82% F3H 41 1.78% PYKS 39 1.69% 16OMT 39 1.69% IFR 37 1.61% GS 32 1.39% CHS 30 1.3% CODM/T6ODM 26 1.13% LAC 26 1.13% T16H 25 1.09% CAS 24 1.04% CYP71 24 1.04% F3'5'H/CYP75A 23 1.0% G8O/G8H 22 0.96% CAD 21 0.91% SMT1/SMT2/SMT3 21 0.91% TRI/TRII 18 0.78% H6H 17 0.74% HCT 15 0.65% CSE 14 0.61% COR 13 0.56% SLS 13 0.56% RAS 13 0.56% TPS 13 0.56% 7DLH 12 0.52% FNS 12 0.52% GES 11 0.48% ANR 10 0.43% 8HGO 9 0.39% CNMT 9 0.39% CHI 9 0.39% F5H/CYP84A 9 0.39% SQE 9 0.39% SGD 8 0.35% BBE 8 0.35% CYP80B1 8 0.35% DFR 8 0.35% CCR 8 0.35% CPD/CYP90A1 8 0.35% CYP90D1 8 0.35% TDC 7 0.3% LAMT 7 0.3% PMT 7 0.3% TAT 7 0.3% MPO 6 0.26% CPR 6 0.26% SQS/FDFT1 6 0.26% BR6OX1/CYP85A1 6 0.26% CYP51G1 6 0.26% AACT 6 0.26% FPPS 6 0.26% MVK 6 0.26% DET2 5 0.22% ROT3/CYP90C1 5 0.22% GGPPS 5 0.22% ISY 4 0.17% CYP719 4 0.17% DWF5 4 0.17% MCT/IspD 4 0.17% 6OMT_4OMT_SOMT 3 0.13% CCoAOMT 3 0.13% PMK 3 0.13% HMGR 3 0.13% IDI 3 0.13% MVD 3 0.13% HMGS 3 0.13% TYDC_DDC 2 0.09% ADC 2 0.09% DWF7 2 0.09% SMO1/SMO2 2 0.09% CPI1 2 0.09% MDS/IspF 2 0.09% HDS/IspG 2 0.09% NCS 1 0.04% FLS 1 0.04% ANS/LDOX 1 0.04% HPPR 1 0.04% DWF1 1 0.04% FK 1 0.04% HYD1 1 0.04% DXS 1 0.04% HDR/IspH 1 0.04% DXR 1 0.04% CMK/IspE 1 0.04%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Phenylpropanoid pathway	259	11	POD (97)	View species results
Terpenoid pathway	190	20	BAHD (58)	View species results
Alkaloid pathway	161	19	PYKS (29)	View species results
Flavonoid pathway	135	10	PAL (38)	View species results
Rosmarinic acid pathway	95	7	PAL (38)	View species results
Steroid pathway	51	12	CAS (20)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	23	897	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	126	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: NMT

Gene	Pathway	Family	Confidence	Status	Best Target
Aaltescaffold_10002100	Alkaloid	NMT	medium	pass	NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Aaltescaffold_100083680	Alkaloid	NMT	medium	pass	NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Aaltescaffold_100084530	Alkaloid	NMT	medium	pass	NMT__00016__sp_F4JNX3_CMKMT_ARATH
Aaltescaffold_100091120	Alkaloid	NMT	medium	borderline	NMT__00057__sp_Q9FR44_PEAM1_ARATH
Aaltescaffold_100099600	Alkaloid	NMT	medium	pass	NMT__00068__sp_Q9XI84_RBCMT_ARATH
Aaltescaffold_100099770	Alkaloid	NMT	medium	pass	NMT__00048__sp_Q8W595_SUVR4_ARATH
Aaltescaffold_100102150	Alkaloid	NMT	low	borderline	NMT__00048__sp_Q8W595_SUVR4_ARATH
Aaltescaffold_100117460	Alkaloid	NMT	low	borderline	NMT__00021__sp_O64827_SUVR5_ARATH
Aaltescaffold_100122790	Alkaloid	NMT	medium	borderline	NMT__00011__sp_A9X7L0_ANMT_RUTGR
Aaltescaffold_10017840	Alkaloid	NMT	medium	borderline	NMT__00023__sp_O82210_ANM12_ARATH
Aaltescaffold_10019010	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Aaltescaffold_10020260	Alkaloid	NMT	low	borderline	NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Aaltescaffold_10026610	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
Aaltescaffold_10026890	Alkaloid	NMT	low	borderline	NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Aaltescaffold_10071680	Alkaloid	NMT	low	borderline	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Aaltescaffold_10075150	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
Aaltescaffold_110131400	Alkaloid	NMT	low	borderline	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Aaltescaffold_110135150	Alkaloid	NMT	medium	pass	NMT__00039__sp_Q84W92_ANM13_ARATH
Aaltescaffold_110139120	Alkaloid	NMT	medium	pass	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Aaltescaffold_110140580	Alkaloid	NMT	low	borderline	NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Aaltescaffold_110150680	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
Aaltescaffold_110162290	Alkaloid	NMT	medium	pass	NMT__00048__sp_Q8W595_SUVR4_ARATH
Aaltescaffold_110170530	Alkaloid	NMT	low	borderline	NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Aaltescaffold_180183080	Alkaloid	NMT	medium	pass	NMT__00060__sp_Q9MAT5_ANM10_ARATH
Aaltescaffold_20192940	Alkaloid	NMT	medium	pass	NMT__00066__sp_Q9SU94_ANM11_ARATH
Aaltescaffold_20194620	Alkaloid	NMT	low	borderline	NMT__00021__sp_O64827_SUVR5_ARATH
Aaltescaffold_20196080	Alkaloid	NMT	medium	pass	NMT__00036__sp_Q6K9X3_NAMT1_ORYSJ
Aaltescaffold_20204840	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
Aaltescaffold_20206360	Alkaloid	NMT	medium	pass	NMT__00023__sp_O82210_ANM12_ARATH
Aaltescaffold_20209620	Alkaloid	NMT	medium	borderline	NMT__00011__sp_A9X7L0_ANMT_RUTGR
Aaltescaffold_20217320	Alkaloid	NMT	medium	pass	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Aaltescaffold_20219190	Alkaloid	NMT	medium	borderline	NMT__00070__sp_W5U2K2_NMT_CATRO
Aaltescaffold_20219210	Alkaloid	NMT	low	borderline	NMT__00024__sp_P0CB22_ATX2_ARATH
Aaltescaffold_20220500	Alkaloid	NMT	low	borderline	NMT__00016__sp_F4JNX3_CMKMT_ARATH
Aaltescaffold_20223770	Alkaloid	NMT	low	borderline	NMT__00024__sp_P0CB22_ATX2_ARATH
Aaltescaffold_20225290	Alkaloid	NMT	medium	pass	NMT__00041__sp_Q8GWT4_ANM15_ARATH
Aaltescaffold_20231420	Alkaloid	NMT	low	borderline	NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Aaltescaffold_30254020	Alkaloid	NMT	low	borderline	NMT__00020__sp_O23372_ATXR3_ARATH
Aaltescaffold_30290810	Alkaloid	NMT	medium	borderline	NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
Aaltescaffold_30307510	Alkaloid	NMT	medium	pass	NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Aaltescaffold_30307520	Alkaloid	NMT	medium	pass	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Aaltescaffold_40329430	Alkaloid	NMT	low	borderline	NMT__00067__sp_Q9T0G7_SUVH9_ARATH
Aaltescaffold_40331680	Alkaloid	NMT	medium	borderline	NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Aaltescaffold_40342630	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Aaltescaffold_50390730	Alkaloid	NMT	low	borderline	NMT__00017__sp_F4K1J4_ATXR7_ARATH
Aaltescaffold_50391160	Alkaloid	NMT	low	borderline	NMT__00055__sp_Q9FNC7_SUVR2_ARATH
Aaltescaffold_50392170	Alkaloid	NMT	low	borderline	NMT__00024__sp_P0CB22_ATX2_ARATH
Aaltescaffold_50392820	Alkaloid	NMT	medium	pass	NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Aaltescaffold_60411980	Alkaloid	NMT	low	borderline	NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Aaltescaffold_60412710	Alkaloid	NMT	medium	borderline	NMT__00005__sp_A0A6C0WW36_CKTCS_CAMSB