Archidium alternifolium (archidium_alternifolium)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Phenylpropanoid pathway 29.07% Terpenoid pathway 21.32% Alkaloid pathway 18.07% Flavonoid pathway 15.15% Rosmarinic acid pathway 10.66% Steroid pathway 5.72%

Family Distribution

891 Candidate Genes

C4H 6.34% C3'H/CYP98A 5.95% PAL 5.47% CYP76 5.21% POD 4.73% BAHD 4.26% 4CL 4.04% NMT 3.17%

Other Families 60.83%

More Families (94)

IFS 73 3.17% BR6OX2/CYP85A2 59 2.56% STR 56 2.43% F3'H/CYP75B 51 2.21% IO 48 2.08% UFGT 48 2.08% DWF4/CYP90B1 48 2.08% UGT 46 2.0% 7DLGT 43 1.87% T3O 42 1.82% COMT 42 1.82% F3H 41 1.78% PYKS 39 1.69% 16OMT 39 1.69% IFR 37 1.61% GS 32 1.39% CHS 30 1.3% CODM/T6ODM 26 1.13% LAC 26 1.13% T16H 25 1.09% CAS 24 1.04% CYP71 24 1.04% F3'5'H/CYP75A 23 1.0% G8O/G8H 22 0.96% CAD 21 0.91% SMT1/SMT2/SMT3 21 0.91% TRI/TRII 18 0.78% H6H 17 0.74% HCT 15 0.65% CSE 14 0.61% COR 13 0.56% SLS 13 0.56% RAS 13 0.56% TPS 13 0.56% 7DLH 12 0.52% FNS 12 0.52% GES 11 0.48% ANR 10 0.43% 8HGO 9 0.39% CNMT 9 0.39% CHI 9 0.39% F5H/CYP84A 9 0.39% SQE 9 0.39% SGD 8 0.35% BBE 8 0.35% CYP80B1 8 0.35% DFR 8 0.35% CCR 8 0.35% CPD/CYP90A1 8 0.35% CYP90D1 8 0.35% TDC 7 0.3% LAMT 7 0.3% PMT 7 0.3% TAT 7 0.3% MPO 6 0.26% CPR 6 0.26% SQS/FDFT1 6 0.26% BR6OX1/CYP85A1 6 0.26% CYP51G1 6 0.26% AACT 6 0.26% FPPS 6 0.26% MVK 6 0.26% DET2 5 0.22% ROT3/CYP90C1 5 0.22% GGPPS 5 0.22% ISY 4 0.17% CYP719 4 0.17% DWF5 4 0.17% MCT/IspD 4 0.17% 6OMT_4OMT_SOMT 3 0.13% CCoAOMT 3 0.13% PMK 3 0.13% HMGR 3 0.13% IDI 3 0.13% MVD 3 0.13% HMGS 3 0.13% TYDC_DDC 2 0.09% ADC 2 0.09% DWF7 2 0.09% SMO1/SMO2 2 0.09% CPI1 2 0.09% MDS/IspF 2 0.09% HDS/IspG 2 0.09% NCS 1 0.04% FLS 1 0.04% ANS/LDOX 1 0.04% HPPR 1 0.04% DWF1 1 0.04% FK 1 0.04% HYD1 1 0.04% DXS 1 0.04% HDR/IspH 1 0.04% DXR 1 0.04% CMK/IspE 1 0.04%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Phenylpropanoid pathway	259	11	POD (97)	View species results
Terpenoid pathway	190	20	BAHD (58)	View species results
Alkaloid pathway	161	19	PYKS (29)	View species results
Flavonoid pathway	135	10	PAL (38)	View species results
Rosmarinic acid pathway	95	7	PAL (38)	View species results
Steroid pathway	51	12	CAS (20)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	23	897	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	126	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: NMT

Gene	Pathway	Family	Confidence	Status	Best Target
Aaltescaffold_60412720	Alkaloid	NMT	medium	borderline	NMT__00043__sp_Q8H0D2_DXMT1_COFAR
Aaltescaffold_60412730	Alkaloid	NMT	low	borderline	NMT__00039__sp_Q84W92_ANM13_ARATH
Aaltescaffold_60412960	Alkaloid	NMT	low	borderline	NMT__00039__sp_Q84W92_ANM13_ARATH
Aaltescaffold_60424720	Alkaloid	NMT	medium	pass	NMT__00061__sp_Q9SAH5_PLMT_ARATH
Aaltescaffold_60424930	Alkaloid	NMT	medium	pass	NMT__00067__sp_Q9T0G7_SUVH9_ARATH
Aaltescaffold_60428040	Alkaloid	NMT	low	borderline	NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
Aaltescaffold_60433340	Alkaloid	NMT	low	borderline	NMT__00048__sp_Q8W595_SUVR4_ARATH
Aaltescaffold_60434240	Alkaloid	NMT	medium	borderline	NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
Aaltescaffold_60437790	Alkaloid	NMT	medium	pass	NMT__00016__sp_F4JNX3_CMKMT_ARATH
Aaltescaffold_70441630	Alkaloid	NMT	medium	pass	NMT__00025__sp_P93831_CLF_ARATH
Aaltescaffold_70446060	Alkaloid	NMT	medium	pass	NMT__00021__sp_O64827_SUVR5_ARATH
Aaltescaffold_70446530	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Aaltescaffold_70446640	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Aaltescaffold_80473350	Alkaloid	NMT	medium	pass	NMT__00040__sp_Q84WW6_ASHH1_ARATH
Aaltescaffold_80492620	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
Aaltescaffold_80494790	Alkaloid	NMT	medium	borderline	NMT__00005__sp_A0A6C0WW36_CKTCS_CAMSB
Aaltescaffold_80498330	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Aaltescaffold_80501160	Alkaloid	NMT	low	borderline	NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Aaltescaffold_90512320	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
Aaltescaffold_90524820	Alkaloid	NMT	medium	borderline	NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Aaltescaffold_90528300	Alkaloid	NMT	low	borderline	NMT__00032__sp_Q5PP37_ATXR2_ARATH
Aaltescaffold_90528330	Alkaloid	NMT	medium	pass	NMT__00032__sp_Q5PP37_ATXR2_ARATH
Aaltescaffold_90532550	Alkaloid	NMT	medium	pass	NMT__00060__sp_Q9MAT5_ANM10_ARATH