Archidium alternifolium (archidium_alternifolium)
Imported from atlas release summary for Archidium alternifolium.
891
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
891
Candidate Genes
C4H
6.34%
C3'H/CYP98A
5.95%
PAL
5.47%
CYP76
5.21%
POD
4.73%
BAHD
4.26%
4CL
4.04%
NMT
3.17%
Other Families
60.83%
More Families (94)
IFS
73
3.17%
BR6OX2/CYP85A2
59
2.56%
STR
56
2.43%
F3'H/CYP75B
51
2.21%
IO
48
2.08%
UFGT
48
2.08%
DWF4/CYP90B1
48
2.08%
UGT
46
2.0%
7DLGT
43
1.87%
T3O
42
1.82%
COMT
42
1.82%
F3H
41
1.78%
PYKS
39
1.69%
16OMT
39
1.69%
IFR
37
1.61%
GS
32
1.39%
CHS
30
1.3%
CODM/T6ODM
26
1.13%
LAC
26
1.13%
T16H
25
1.09%
CAS
24
1.04%
CYP71
24
1.04%
F3'5'H/CYP75A
23
1.0%
G8O/G8H
22
0.96%
CAD
21
0.91%
SMT1/SMT2/SMT3
21
0.91%
TRI/TRII
18
0.78%
H6H
17
0.74%
HCT
15
0.65%
CSE
14
0.61%
COR
13
0.56%
SLS
13
0.56%
RAS
13
0.56%
TPS
13
0.56%
7DLH
12
0.52%
FNS
12
0.52%
GES
11
0.48%
ANR
10
0.43%
8HGO
9
0.39%
CNMT
9
0.39%
CHI
9
0.39%
F5H/CYP84A
9
0.39%
SQE
9
0.39%
SGD
8
0.35%
BBE
8
0.35%
CYP80B1
8
0.35%
DFR
8
0.35%
CCR
8
0.35%
CPD/CYP90A1
8
0.35%
CYP90D1
8
0.35%
TDC
7
0.3%
LAMT
7
0.3%
PMT
7
0.3%
TAT
7
0.3%
MPO
6
0.26%
CPR
6
0.26%
SQS/FDFT1
6
0.26%
BR6OX1/CYP85A1
6
0.26%
CYP51G1
6
0.26%
AACT
6
0.26%
FPPS
6
0.26%
MVK
6
0.26%
DET2
5
0.22%
ROT3/CYP90C1
5
0.22%
GGPPS
5
0.22%
ISY
4
0.17%
CYP719
4
0.17%
DWF5
4
0.17%
MCT/IspD
4
0.17%
6OMT_4OMT_SOMT
3
0.13%
CCoAOMT
3
0.13%
PMK
3
0.13%
HMGR
3
0.13%
IDI
3
0.13%
MVD
3
0.13%
HMGS
3
0.13%
TYDC_DDC
2
0.09%
ADC
2
0.09%
DWF7
2
0.09%
SMO1/SMO2
2
0.09%
CPI1
2
0.09%
MDS/IspF
2
0.09%
HDS/IspG
2
0.09%
NCS
1
0.04%
FLS
1
0.04%
ANS/LDOX
1
0.04%
HPPR
1
0.04%
DWF1
1
0.04%
FK
1
0.04%
HYD1
1
0.04%
DXS
1
0.04%
HDR/IspH
1
0.04%
DXR
1
0.04%
CMK/IspE
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 259 | 11 | POD (97) | View species results |
| Terpenoid pathway | 190 | 20 | BAHD (58) | View species results |
| Alkaloid pathway | 161 | 19 | PYKS (29) | View species results |
| Flavonoid pathway | 135 | 10 | PAL (38) | View species results |
| Rosmarinic acid pathway | 95 | 7 | PAL (38) | View species results |
| Steroid pathway | 51 | 12 | CAS (20) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 897 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 126 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PAL
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Aaltescaffold_10001710 | Flavonoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Aaltescaffold_10001740 | Flavonoid | PAL | medium | pass | PAL__00003__sp_P45724_PAL2_ARATH |
| Aaltescaffold_10001750 | Flavonoid | PAL | medium | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Aaltescaffold_10004130 | Flavonoid | PAL | medium | pass | PAL__00008__sp_Q8VXG7_PALY_MAIZE |
| Aaltescaffold_10004140 | Flavonoid | PAL | medium | pass | PAL__00003__sp_P45724_PAL2_ARATH |
| Aaltescaffold_10004200 | Flavonoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Aaltescaffold_10004250 | Flavonoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Aaltescaffold_10004390 | Flavonoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Aaltescaffold_10004420 | Flavonoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Aaltescaffold_10004460 | Flavonoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Aaltescaffold_10004500 | Flavonoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Aaltescaffold_10007050 | Flavonoid | PAL | medium | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Aaltescaffold_10007060 | Flavonoid | PAL | high | pass | PAL__00003__sp_P45724_PAL2_ARATH |
| Aaltescaffold_10007090 | Flavonoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Aaltescaffold_100086850 | Flavonoid | PAL | medium | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Aaltescaffold_100086890 | Flavonoid | PAL | medium | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Aaltescaffold_100087080 | Flavonoid | PAL | low | borderline | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Aaltescaffold_10061790 | Flavonoid | PAL | high | pass | PAL__00001__sp_P24481_PAL1_PETCR |
| Aaltescaffold_110138000 | Flavonoid | PAL | low | borderline | PAL__00005__sp_Q50EX7_PAL1_PETHY |
| Aaltescaffold_20189550 | Flavonoid | PAL | low | borderline | PAL__00005__sp_Q50EX7_PAL1_PETHY |
| Aaltescaffold_20191420 | Flavonoid | PAL | high | pass | PAL__00005__sp_Q50EX7_PAL1_PETHY |
| Aaltescaffold_20207230 | Flavonoid | PAL | medium | pass | PAL__00006__sp_Q68G84_PAM_TAXCH |
| Aaltescaffold_20210370 | Flavonoid | PAL | low | borderline | PAL__00003__sp_P45724_PAL2_ARATH |
| Aaltescaffold_20227370 | Flavonoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Aaltescaffold_20227430 | Flavonoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Aaltescaffold_30290750 | Flavonoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Aaltescaffold_30301550 | Flavonoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Aaltescaffold_30308450 | Flavonoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Aaltescaffold_40327350 | Flavonoid | PAL | medium | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Aaltescaffold_40328210 | Flavonoid | PAL | medium | pass | PAL__00008__sp_Q8VXG7_PALY_MAIZE |
| Aaltescaffold_40328220 | Flavonoid | PAL | medium | pass | PAL__00003__sp_P45724_PAL2_ARATH |
| Aaltescaffold_40330020 | Flavonoid | PAL | high | pass | PAL__00001__sp_P24481_PAL1_PETCR |
| Aaltescaffold_50374440 | Flavonoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Aaltescaffold_50374480 | Flavonoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Aaltescaffold_50396030 | Flavonoid | PAL | medium | pass | PAL__00008__sp_Q8VXG7_PALY_MAIZE |
| Aaltescaffold_70461840 | Flavonoid | PAL | medium | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Aaltescaffold_70461850 | Flavonoid | PAL | high | pass | PAL__00001__sp_P24481_PAL1_PETCR |
| Aaltescaffold_70461860 | Flavonoid | PAL | medium | pass | PAL__00003__sp_P45724_PAL2_ARATH |
| Aaltescaffold_80484670 | Flavonoid | PAL | high | pass | PAL__00001__sp_P24481_PAL1_PETCR |
| Aaltescaffold_90523420 | Flavonoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Aaltescaffold_90523440 | Flavonoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Aaltescaffold_90523810 | Flavonoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Aaltescaffold_10001710 | Phenylpropanoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Aaltescaffold_10001740 | Phenylpropanoid | PAL | medium | pass | PAL__00003__sp_P45724_PAL2_ARATH |
| Aaltescaffold_10001750 | Phenylpropanoid | PAL | medium | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Aaltescaffold_10004130 | Phenylpropanoid | PAL | medium | pass | PAL__00008__sp_Q8VXG7_PALY_MAIZE |
| Aaltescaffold_10004140 | Phenylpropanoid | PAL | medium | pass | PAL__00003__sp_P45724_PAL2_ARATH |
| Aaltescaffold_10004200 | Phenylpropanoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Aaltescaffold_10004250 | Phenylpropanoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Aaltescaffold_10004390 | Phenylpropanoid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |