PlantSME Plant secondary metabolism enzyme database

Archidium alternifolium (archidium_alternifolium)

Imported from atlas release summary for Archidium alternifolium.

891
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (94)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 259 11 POD (97) View species results
Terpenoid pathway 190 20 BAHD (58) View species results
Alkaloid pathway 161 19 PYKS (29) View species results
Flavonoid pathway 135 10 PAL (38) View species results
Rosmarinic acid pathway 95 7 PAL (38) View species results
Steroid pathway 51 12 CAS (20) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 897 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 126 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PAL
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Gene Pathway Family Confidence Status Best Target
Aaltescaffold_100087080 Rosmarinic Acid PAL low borderline PAL__00009__sp_Q9SS45_PAL4_ARATH
Aaltescaffold_10061790 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Aaltescaffold_110138000 Rosmarinic Acid PAL low borderline PAL__00005__sp_Q50EX7_PAL1_PETHY
Aaltescaffold_20189550 Rosmarinic Acid PAL low borderline PAL__00005__sp_Q50EX7_PAL1_PETHY
Aaltescaffold_20191420 Rosmarinic Acid PAL high pass PAL__00005__sp_Q50EX7_PAL1_PETHY
Aaltescaffold_20207230 Rosmarinic Acid PAL medium pass PAL__00006__sp_Q68G84_PAM_TAXCH
Aaltescaffold_20210370 Rosmarinic Acid PAL low borderline PAL__00003__sp_P45724_PAL2_ARATH
Aaltescaffold_20227370 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Aaltescaffold_20227430 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Aaltescaffold_30290750 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Aaltescaffold_30301550 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Aaltescaffold_30308450 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Aaltescaffold_40327350 Rosmarinic Acid PAL medium pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Aaltescaffold_40328210 Rosmarinic Acid PAL medium pass PAL__00008__sp_Q8VXG7_PALY_MAIZE
Aaltescaffold_40328220 Rosmarinic Acid PAL medium pass PAL__00003__sp_P45724_PAL2_ARATH
Aaltescaffold_40330020 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Aaltescaffold_50374440 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Aaltescaffold_50374480 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Aaltescaffold_50396030 Rosmarinic Acid PAL medium pass PAL__00008__sp_Q8VXG7_PALY_MAIZE
Aaltescaffold_70461840 Rosmarinic Acid PAL medium pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Aaltescaffold_70461850 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Aaltescaffold_70461860 Rosmarinic Acid PAL medium pass PAL__00003__sp_P45724_PAL2_ARATH
Aaltescaffold_80484670 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Aaltescaffold_90523420 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Aaltescaffold_90523440 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Aaltescaffold_90523810 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH