Archidium alternifolium (archidium_alternifolium)
Imported from atlas release summary for Archidium alternifolium.
1162
Candidate Protein Records
891
Pathway-Level Records
2303
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
2303
Family-Level Calls
C4H
6.34%
C3'H/CYP98A
5.95%
PAL
5.47%
CYP76
5.21%
POD
4.73%
BAHD
4.26%
4CL
4.04%
NMT
3.17%
Other Families
60.83%
More Families (94)
IFS
73
3.17%
BR6OX2/CYP85A2
59
2.56%
STR
56
2.43%
F3'H/CYP75B
51
2.21%
IO
48
2.08%
UFGT
48
2.08%
DWF4/CYP90B1
48
2.08%
UGT
46
2.0%
7DLGT
43
1.87%
T3O
42
1.82%
COMT
42
1.82%
F3H
41
1.78%
PYKS
39
1.69%
16OMT
39
1.69%
IFR
37
1.61%
GS
32
1.39%
CHS
30
1.3%
CODM/T6ODM
26
1.13%
LAC
26
1.13%
T16H
25
1.09%
CAS
24
1.04%
CYP71
24
1.04%
F3'5'H/CYP75A
23
1.0%
G8O/G8H
22
0.96%
CAD
21
0.91%
SMT1/SMT2/SMT3
21
0.91%
TRI/TRII
18
0.78%
H6H
17
0.74%
HCT
15
0.65%
CSE
14
0.61%
COR
13
0.56%
SLS
13
0.56%
RAS
13
0.56%
TPS
13
0.56%
7DLH
12
0.52%
FNS
12
0.52%
GES
11
0.48%
ANR
10
0.43%
8HGO
9
0.39%
CNMT
9
0.39%
CHI
9
0.39%
F5H/CYP84A
9
0.39%
SQE
9
0.39%
SGD
8
0.35%
BBE
8
0.35%
CYP80B1
8
0.35%
DFR
8
0.35%
CCR
8
0.35%
CPD/CYP90A1
8
0.35%
CYP90D1
8
0.35%
TDC
7
0.3%
LAMT
7
0.3%
PMT
7
0.3%
TAT
7
0.3%
MPO
6
0.26%
CPR
6
0.26%
SQS/FDFT1
6
0.26%
BR6OX1/CYP85A1
6
0.26%
CYP51G1
6
0.26%
AACT
6
0.26%
FPPS
6
0.26%
MVK
6
0.26%
DET2
5
0.22%
ROT3/CYP90C1
5
0.22%
GGPPS
5
0.22%
ISY
4
0.17%
CYP719
4
0.17%
DWF5
4
0.17%
MCT/IspD
4
0.17%
6OMT_4OMT_SOMT
3
0.13%
CCoAOMT
3
0.13%
PMK
3
0.13%
HMGR
3
0.13%
IDI
3
0.13%
MVD
3
0.13%
HMGS
3
0.13%
TYDC_DDC
2
0.09%
ADC
2
0.09%
DWF7
2
0.09%
SMO1/SMO2
2
0.09%
CPI1
2
0.09%
MDS/IspF
2
0.09%
HDS/IspG
2
0.09%
NCS
1
0.04%
FLS
1
0.04%
ANS/LDOX
1
0.04%
HPPR
1
0.04%
DWF1
1
0.04%
FK
1
0.04%
HYD1
1
0.04%
DXS
1
0.04%
HDR/IspH
1
0.04%
DXR
1
0.04%
CMK/IspE
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 259 | 11 | POD (97) | View species results |
| Terpenoid pathway | 190 | 20 | BAHD (58) | View species results |
| Alkaloid pathway | 161 | 19 | PYKS (29) | View species results |
| Flavonoid pathway | 135 | 10 | PAL (38) | View species results |
| Rosmarinic acid pathway | 95 | 7 | PAL (38) | View species results |
| Steroid pathway | 51 | 12 | CAS (20) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 897 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 126 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Aaltescaffold_30249050 | Phenylpropanoid | 4CL | low | borderline |
| Aaltescaffold_30253850 | Phenylpropanoid | 4CL | medium | pass |
| Aaltescaffold_30268970 | Phenylpropanoid | 4CL | medium | pass |
| Aaltescaffold_40346940 | Phenylpropanoid | 4CL | medium | pass |
| Aaltescaffold_50364030 | Phenylpropanoid | 4CL | low | borderline |
| Aaltescaffold_50382790 | Phenylpropanoid | 4CL | low | borderline |
| Aaltescaffold_50383350 | Phenylpropanoid | 4CL | low | borderline |
| Aaltescaffold_50383360 | Phenylpropanoid | 4CL | low | borderline |
| Aaltescaffold_60418210 | Phenylpropanoid | 4CL | low | borderline |
| Aaltescaffold_60424440 | Phenylpropanoid | 4CL | medium | pass |
| Aaltescaffold_70445610 | Phenylpropanoid | 4CL | medium | pass |
| Aaltescaffold_70449350 | Phenylpropanoid | 4CL | medium | pass |
| Aaltescaffold_70460080 | Phenylpropanoid | 4CL | low | borderline |
| Aaltescaffold_70461580 | Phenylpropanoid | 4CL | low | borderline |
| Aaltescaffold_80484650 | Phenylpropanoid | 4CL | low | borderline |
| Aaltescaffold_90528040 | Phenylpropanoid | 4CL | medium | pass |
| Aaltescaffold_10007690 | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| Aaltescaffold_100084370 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| Aaltescaffold_100084610 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| Aaltescaffold_100084940 | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| Aaltescaffold_100085420 | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| Aaltescaffold_100086470 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| Aaltescaffold_100086480 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| Aaltescaffold_100086490 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| Aaltescaffold_100086500 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| Aaltescaffold_100095640 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| Aaltescaffold_100100240 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| Aaltescaffold_100106570 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| Aaltescaffold_100107480 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| Aaltescaffold_100113980 | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| Aaltescaffold_100115180 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| Aaltescaffold_100120280 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| Aaltescaffold_10017420 | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| Aaltescaffold_10033710 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| Aaltescaffold_10053730 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| Aaltescaffold_20183690 | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| Aaltescaffold_20185470 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| Aaltescaffold_20185650 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| Aaltescaffold_20186700 | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| Aaltescaffold_20186850 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| Aaltescaffold_20191620 | Phenylpropanoid | C3'H/CYP98A | medium | pass |
| Aaltescaffold_20192640 | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| Aaltescaffold_20193230 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| Aaltescaffold_20194750 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| Aaltescaffold_20203190 | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| Aaltescaffold_20207910 | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| Aaltescaffold_20210690 | Phenylpropanoid | C3'H/CYP98A | medium | borderline |
| Aaltescaffold_20210720 | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| Aaltescaffold_20211390 | Phenylpropanoid | C3'H/CYP98A | low | borderline |
| Aaltescaffold_20211870 | Phenylpropanoid | C3'H/CYP98A | medium | pass |