PlantSME Plant secondary metabolism enzyme database

Avicennia marina (avicennia_marina)

Imported from atlas release summary for Avicennia marina.

1629
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 476 19 BAHD (174) View species results
Alkaloid pathway 359 23 7DLGT (82) View species results
Phenylpropanoid pathway 327 12 POD (122) View species results
Flavonoid pathway 235 13 UFGT (155) View species results
Rosmarinic acid pathway 150 7 C4H (56) View species results
Steroid pathway 82 11 CAS (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1428 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 317 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status Best Target
avicennia_marina_AM_23177 Phenylpropanoid CAD low borderline CAD__00012__sp_Q02972_CADH8_ARATH
avicennia_marina_AM_23392 Phenylpropanoid CAD low borderline CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
avicennia_marina_AM_23410 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
avicennia_marina_AM_23709 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
avicennia_marina_AM_23936 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
avicennia_marina_AM_23937 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
avicennia_marina_AM_23938 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
avicennia_marina_AM_24185 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
avicennia_marina_AM_24186 Phenylpropanoid CAD low borderline CAD__00012__sp_Q02972_CADH8_ARATH
avicennia_marina_AM_24656 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
avicennia_marina_AM_26212 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
avicennia_marina_AM_26270 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
avicennia_marina_AM_26930 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
avicennia_marina_AM_27066 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
avicennia_marina_AM_28060 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
avicennia_marina_AM_28300 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
avicennia_marina_AM_28546 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
avicennia_marina_AM_28555 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
avicennia_marina_AM_28810 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
avicennia_marina_AM_29618 Phenylpropanoid CAD medium pass CAD__00014__sp_Q2KNL5_CADH1_OCIBA
avicennia_marina_AM_29812 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
avicennia_marina_AM_30003 Phenylpropanoid CAD low borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
avicennia_marina_AM_31062 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
avicennia_marina_AM_31063 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
avicennia_marina_AM_31064 Phenylpropanoid CAD medium pass CAD__00011__sp_Q02971_CADH7_ARATH
avicennia_marina_AM_33988 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM