PlantSME Plant secondary metabolism enzyme database

Avicennia marina (avicennia_marina)

Imported from atlas release summary for Avicennia marina.

1629
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 476 19 BAHD (174) View species results
Alkaloid pathway 359 23 7DLGT (82) View species results
Phenylpropanoid pathway 327 12 POD (122) View species results
Flavonoid pathway 235 13 UFGT (155) View species results
Rosmarinic acid pathway 150 7 C4H (56) View species results
Steroid pathway 82 11 CAS (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1428 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 317 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
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Gene Pathway Family Confidence Status
avicennia_marina_AM_02338 Alkaloid GS low borderline
avicennia_marina_AM_02434 Alkaloid GS high pass
avicennia_marina_AM_02435 Alkaloid GS high pass
avicennia_marina_AM_02436 Alkaloid GS high pass
avicennia_marina_AM_03253 Alkaloid GS high pass
avicennia_marina_AM_03254 Alkaloid GS high pass
avicennia_marina_AM_03272 Alkaloid GS high pass
avicennia_marina_AM_06021 Alkaloid GS high pass
avicennia_marina_AM_06592 Alkaloid GS low borderline
avicennia_marina_AM_07290 Alkaloid GS high pass
avicennia_marina_AM_07443 Alkaloid GS medium pass
avicennia_marina_AM_07643 Alkaloid GS low borderline
avicennia_marina_AM_07761 Alkaloid GS low borderline
avicennia_marina_AM_07762 Alkaloid GS low borderline
avicennia_marina_AM_09124 Alkaloid GS low borderline
avicennia_marina_AM_09812 Alkaloid GS low borderline
avicennia_marina_AM_10150 Alkaloid GS low borderline
avicennia_marina_AM_10774 Alkaloid GS high pass
avicennia_marina_AM_12784 Alkaloid GS medium pass
avicennia_marina_AM_12943 Alkaloid GS low borderline
avicennia_marina_AM_13072 Alkaloid GS medium pass
avicennia_marina_AM_14962 Alkaloid GS high pass
avicennia_marina_AM_15697 Alkaloid GS high pass
avicennia_marina_AM_15978 Alkaloid GS low borderline
avicennia_marina_AM_17116 Alkaloid GS low borderline
avicennia_marina_AM_18516 Alkaloid GS high pass
avicennia_marina_AM_18517 Alkaloid GS high pass
avicennia_marina_AM_21755 Alkaloid GS high pass
avicennia_marina_AM_22111 Alkaloid GS high pass
avicennia_marina_AM_23002 Alkaloid GS high pass
avicennia_marina_AM_23392 Alkaloid GS medium pass
avicennia_marina_AM_25288 Alkaloid GS low borderline
avicennia_marina_AM_26768 Alkaloid GS low borderline
avicennia_marina_AM_26874 Alkaloid GS low borderline
avicennia_marina_AM_26930 Alkaloid GS medium pass
avicennia_marina_AM_27390 Alkaloid GS low borderline
avicennia_marina_AM_27391 Alkaloid GS low borderline
avicennia_marina_AM_29461 Alkaloid GS low borderline
avicennia_marina_AM_29618 Alkaloid GS high pass
avicennia_marina_AM_29812 Alkaloid GS high pass
avicennia_marina_AM_31062 Alkaloid GS high pass
avicennia_marina_AM_31063 Alkaloid GS high pass
avicennia_marina_AM_33089 Alkaloid GS low borderline