PlantSME Plant secondary metabolism enzyme database

Avicennia marina (avicennia_marina)

Imported from atlas release summary for Avicennia marina.

1629
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 476 19 BAHD (174) View species results
Alkaloid pathway 359 23 7DLGT (82) View species results
Phenylpropanoid pathway 327 12 POD (122) View species results
Flavonoid pathway 235 13 UFGT (155) View species results
Rosmarinic acid pathway 150 7 C4H (56) View species results
Steroid pathway 82 11 CAS (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1428 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 317 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GES
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Gene Pathway Family Confidence Status Best Target
avicennia_marina_AM_00009 Alkaloid GES medium pass GES__00009__sp_Q8GUE4_GERS_CINTE
avicennia_marina_AM_00070 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
avicennia_marina_AM_00155 Alkaloid GES medium pass GES__00003__sp_C0KWV6_GRNL7_PERFR
avicennia_marina_AM_00168 Alkaloid GES medium pass GES__00002__sp_C0KWV4_GRNLG_PERFH
avicennia_marina_AM_00184 Alkaloid GES medium pass GES__00009__sp_Q8GUE4_GERS_CINTE
avicennia_marina_AM_05334 Alkaloid GES low borderline GES__00010__sp_Q93YV0_GES_ARATH
avicennia_marina_AM_10307 Alkaloid GES medium pass GES__00009__sp_Q8GUE4_GERS_CINTE
avicennia_marina_AM_11938 Alkaloid GES medium pass GES__00009__sp_Q8GUE4_GERS_CINTE
avicennia_marina_AM_13940 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
avicennia_marina_AM_15199 Alkaloid GES medium pass GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
avicennia_marina_AM_16895 Alkaloid GES low borderline GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
avicennia_marina_AM_17962 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
avicennia_marina_AM_18649 Alkaloid GES medium pass GES__00009__sp_Q8GUE4_GERS_CINTE
avicennia_marina_AM_18651 Alkaloid GES medium pass GES__00009__sp_Q8GUE4_GERS_CINTE
avicennia_marina_AM_18742 Alkaloid GES medium pass GES__00009__sp_Q8GUE4_GERS_CINTE
avicennia_marina_AM_19679 Alkaloid GES low borderline GES__00010__sp_Q93YV0_GES_ARATH
avicennia_marina_AM_19693 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
avicennia_marina_AM_23396 Alkaloid GES low borderline GES__00008__sp_Q84ZW8_ACSS_MAIZE
avicennia_marina_AM_23709 Alkaloid GES medium pass GES__00007__sp_Q6USK1_GERS_OCIBA
avicennia_marina_AM_25157 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
avicennia_marina_AM_26270 Alkaloid GES low borderline GES__00010__sp_Q93YV0_GES_ARATH
avicennia_marina_AM_27066 Alkaloid GES medium pass GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
avicennia_marina_AM_28060 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
avicennia_marina_AM_28546 Alkaloid GES medium pass GES__00009__sp_Q8GUE4_GERS_CINTE
avicennia_marina_AM_28810 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
avicennia_marina_AM_29046 Alkaloid GES medium pass GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
avicennia_marina_AM_30541 Alkaloid GES low borderline GES__00008__sp_Q84ZW8_ACSS_MAIZE
avicennia_marina_AM_33988 Alkaloid GES medium pass GES__00001__sp_A0A7G5KLV3_TPS4_CANOD