Avicennia marina (avicennia_marina)
Imported from atlas release summary for Avicennia marina.
1629
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1629
Candidate Genes
BAHD
5.81%
C3'H/CYP98A
5.66%
C4H
5.46%
UGT
4.76%
4CL
4.74%
7DLGT
4.31%
UFGT
4.16%
IFS
3.98%
Other Families
61.11%
More Families (97)
CYP76
146
3.66%
POD
139
3.48%
T3O
137
3.43%
F3H
106
2.66%
DWF4/CYP90B1
85
2.13%
NMT
79
1.98%
CAD
76
1.9%
F3'H/CYP75B
72
1.8%
CODM/T6ODM
68
1.7%
BR6OX2/CYP85A2
61
1.53%
STR
56
1.4%
SMT1/SMT2/SMT3
53
1.33%
H6H
50
1.25%
LAC
45
1.13%
IFR
44
1.1%
TRI/TRII
43
1.08%
GS
43
1.08%
HCT
43
1.08%
CYP71
43
1.08%
RAS
42
1.05%
CAS
42
1.05%
CYP90D1
40
1.0%
PMT
38
0.95%
PYKS
37
0.93%
ANR
36
0.9%
IO
32
0.8%
T16H
31
0.78%
TPS
31
0.78%
G8O/G8H
30
0.75%
SGD
29
0.73%
GES
28
0.7%
NCS
27
0.68%
COMT
27
0.68%
SLS
25
0.63%
8HGO
24
0.6%
CSE
24
0.6%
CPD/CYP90A1
24
0.6%
FNS
21
0.53%
TAT
21
0.53%
CCR
20
0.5%
CYP51G1
18
0.45%
ANS/LDOX
17
0.43%
F3'5'H/CYP75A
16
0.4%
FPPS
16
0.4%
GGPPS
16
0.4%
CNMT
15
0.38%
7DLH
15
0.38%
PAL
15
0.38%
AACT
14
0.35%
HPPR
13
0.33%
BR6OX1/CYP85A1
13
0.33%
COR
12
0.3%
CHS
12
0.3%
ROT3/CYP90C1
12
0.3%
DFR
11
0.28%
16OMT
10
0.25%
LAMT
10
0.25%
F5H/CYP84A
10
0.25%
MPO
9
0.23%
CCoAOMT
9
0.23%
CPR
9
0.23%
6OMT_4OMT_SOMT
8
0.2%
CYP80B1
8
0.2%
SQS/FDFT1
8
0.2%
SQE
8
0.2%
ISY
7
0.18%
ADC
7
0.18%
HMGR
7
0.18%
DXS
7
0.18%
TYDC_DDC
6
0.15%
FLS
6
0.15%
SMO1/SMO2
6
0.15%
MVD
6
0.15%
MVK
6
0.15%
TDC
5
0.13%
CYP719
5
0.13%
MCT/IspD
5
0.13%
HMGS
4
0.1%
IDI
4
0.1%
BBE
3
0.08%
XMT_MXMT_DXMT
3
0.08%
CHI
3
0.08%
DET2
3
0.08%
ODC
2
0.05%
CYP80F1
2
0.05%
CPI1
2
0.05%
DWF1
2
0.05%
CMK/IspE
2
0.05%
HDS/IspG
2
0.05%
MDS/IspF
2
0.05%
DXR
2
0.05%
HDR/IspH
2
0.05%
PMK
2
0.05%
DWF7
1
0.03%
DWF5
1
0.03%
FK
1
0.03%
HYD1
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 476 | 19 | BAHD (174) | View species results |
| Alkaloid pathway | 359 | 23 | 7DLGT (82) | View species results |
| Phenylpropanoid pathway | 327 | 12 | POD (122) | View species results |
| Flavonoid pathway | 235 | 13 | UFGT (155) | View species results |
| Rosmarinic acid pathway | 150 | 7 | C4H (56) | View species results |
| Steroid pathway | 82 | 11 | CAS (33) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1428 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 317 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GGPPS
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| avicennia_marina_AM_02390 | Terpenoid | GGPPS | medium | borderline | GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH |
| avicennia_marina_AM_02623 | Terpenoid | GGPPS | medium | borderline | GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH |
| avicennia_marina_AM_03783 | Terpenoid | GGPPS | medium | borderline | GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH |
| avicennia_marina_AM_03786 | Terpenoid | GGPPS | medium | borderline | GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH |
| avicennia_marina_AM_03947 | Terpenoid | GGPPS | medium | borderline | GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH |
| avicennia_marina_AM_04231 | Terpenoid | GGPPS | medium | borderline | GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH |
| avicennia_marina_AM_05945 | Terpenoid | GGPPS | medium | borderline | GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH |
| avicennia_marina_AM_06014 | Terpenoid | GGPPS | medium | borderline | GGPPS__00001__sp_Q8S948_SPS1_ARATH |
| avicennia_marina_AM_08027 | Terpenoid | GGPPS | medium | borderline | GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH |
| avicennia_marina_AM_09571 | Terpenoid | GGPPS | medium | borderline | GGPPS__00001__sp_Q8S948_SPS1_ARATH |
| avicennia_marina_AM_13252 | Terpenoid | GGPPS | medium | borderline | GGPPS__00001__sp_Q8S948_SPS1_ARATH |
| avicennia_marina_AM_15020 | Terpenoid | GGPPS | medium | borderline | GGPPS__00001__sp_Q8S948_SPS1_ARATH |
| avicennia_marina_AM_15533 | Terpenoid | GGPPS | medium | borderline | GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH |
| avicennia_marina_AM_17128 | Terpenoid | GGPPS | medium | borderline | GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH |
| avicennia_marina_AM_20859 | Terpenoid | GGPPS | medium | borderline | GGPPS__00001__sp_Q8S948_SPS1_ARATH |
| avicennia_marina_AM_25078 | Terpenoid | GGPPS | medium | borderline | GGPPS__00001__sp_Q8S948_SPS1_ARATH |