PlantSME Plant secondary metabolism enzyme database

Avicennia marina (avicennia_marina)

Imported from atlas release summary for Avicennia marina.

1629
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 476 19 BAHD (174) View species results
Alkaloid pathway 359 23 7DLGT (82) View species results
Phenylpropanoid pathway 327 12 POD (122) View species results
Flavonoid pathway 235 13 UFGT (155) View species results
Rosmarinic acid pathway 150 7 C4H (56) View species results
Steroid pathway 82 11 CAS (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1428 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 317 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status
avicennia_marina_AM_00595 Alkaloid NCS medium borderline
avicennia_marina_AM_01552 Alkaloid NCS medium borderline
avicennia_marina_AM_02943 Alkaloid NCS medium borderline
avicennia_marina_AM_05655 Alkaloid NCS low borderline
avicennia_marina_AM_06108 Alkaloid NCS low borderline
avicennia_marina_AM_06673 Alkaloid NCS medium pass
avicennia_marina_AM_09863 Alkaloid NCS low borderline
avicennia_marina_AM_12316 Alkaloid NCS medium borderline
avicennia_marina_AM_15474 Alkaloid NCS low borderline
avicennia_marina_AM_15475 Alkaloid NCS low borderline
avicennia_marina_AM_17101 Alkaloid NCS medium borderline
avicennia_marina_AM_18634 Alkaloid NCS medium borderline
avicennia_marina_AM_18725 Alkaloid NCS medium borderline
avicennia_marina_AM_19929 Alkaloid NCS medium borderline
avicennia_marina_AM_19936 Alkaloid NCS medium borderline
avicennia_marina_AM_20789 Alkaloid NCS low borderline
avicennia_marina_AM_21645 Alkaloid NCS low borderline
avicennia_marina_AM_21646 Alkaloid NCS low borderline
avicennia_marina_AM_21647 Alkaloid NCS low borderline
avicennia_marina_AM_21648 Alkaloid NCS low borderline
avicennia_marina_AM_23776 Alkaloid NCS low borderline
avicennia_marina_AM_24023 Alkaloid NCS low borderline
avicennia_marina_AM_25753 Alkaloid NCS low borderline
avicennia_marina_AM_27542 Alkaloid NCS medium borderline
avicennia_marina_AM_28004 Alkaloid NCS medium borderline
avicennia_marina_AM_30822 Alkaloid NCS medium borderline
avicennia_marina_AM_33935 Alkaloid NCS medium borderline