PlantSME Plant secondary metabolism enzyme database

Avicennia marina (avicennia_marina)

Imported from atlas release summary for Avicennia marina.

1629
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 476 19 BAHD (174) View species results
Alkaloid pathway 359 23 7DLGT (82) View species results
Phenylpropanoid pathway 327 12 POD (122) View species results
Flavonoid pathway 235 13 UFGT (155) View species results
Rosmarinic acid pathway 150 7 C4H (56) View species results
Steroid pathway 82 11 CAS (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1428 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 317 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status Best Target
avicennia_marina_AM_00266 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
avicennia_marina_AM_00267 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
avicennia_marina_AM_00269 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
avicennia_marina_AM_00434 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
avicennia_marina_AM_00979 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
avicennia_marina_AM_01382 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
avicennia_marina_AM_02580 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
avicennia_marina_AM_02917 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
avicennia_marina_AM_02967 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
avicennia_marina_AM_03036 Phenylpropanoid LAC low borderline LAC__00003__sp_Q84J37_LAC15_ARATH
avicennia_marina_AM_03834 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
avicennia_marina_AM_04944 Phenylpropanoid LAC medium pass LAC__00004__sp_Q9LFD2_LAC8_ARATH
avicennia_marina_AM_04976 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
avicennia_marina_AM_04977 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
avicennia_marina_AM_05806 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
avicennia_marina_AM_06455 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
avicennia_marina_AM_06477 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
avicennia_marina_AM_06478 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
avicennia_marina_AM_06866 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
avicennia_marina_AM_06868 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
avicennia_marina_AM_06869 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
avicennia_marina_AM_07505 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
avicennia_marina_AM_08533 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
avicennia_marina_AM_08901 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
avicennia_marina_AM_09864 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
avicennia_marina_AM_09887 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
avicennia_marina_AM_11363 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
avicennia_marina_AM_12194 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
avicennia_marina_AM_15430 Phenylpropanoid LAC low borderline LAC__00001__sp_O80434_LAC4_ARATH
avicennia_marina_AM_16731 Phenylpropanoid LAC low borderline LAC__00004__sp_Q9LFD2_LAC8_ARATH
avicennia_marina_AM_18231 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
avicennia_marina_AM_19428 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
avicennia_marina_AM_20096 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
avicennia_marina_AM_23403 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
avicennia_marina_AM_23540 Phenylpropanoid LAC low borderline LAC__00002__sp_O81081_LAC2_ARATH
avicennia_marina_AM_25257 Phenylpropanoid LAC low borderline LAC__00003__sp_Q84J37_LAC15_ARATH
avicennia_marina_AM_26481 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
avicennia_marina_AM_26484 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
avicennia_marina_AM_27160 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
avicennia_marina_AM_27453 Phenylpropanoid LAC medium pass LAC__00002__sp_O81081_LAC2_ARATH
avicennia_marina_AM_27653 Phenylpropanoid LAC low borderline LAC__00003__sp_Q84J37_LAC15_ARATH
avicennia_marina_AM_30730 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
avicennia_marina_AM_30751 Phenylpropanoid LAC medium pass LAC__00001__sp_O80434_LAC4_ARATH
avicennia_marina_AM_32429 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH
avicennia_marina_AM_32430 Phenylpropanoid LAC medium pass LAC__00003__sp_Q84J37_LAC15_ARATH