PlantSME Plant secondary metabolism enzyme database

Avicennia marina (avicennia_marina)

Imported from atlas release summary for Avicennia marina.

1629
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 476 19 BAHD (174) View species results
Alkaloid pathway 359 23 7DLGT (82) View species results
Phenylpropanoid pathway 327 12 POD (122) View species results
Flavonoid pathway 235 13 UFGT (155) View species results
Rosmarinic acid pathway 150 7 C4H (56) View species results
Steroid pathway 82 11 CAS (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1428 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 317 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status
avicennia_marina_AM_00827 Alkaloid PMT low borderline
avicennia_marina_AM_02958 Alkaloid PMT low borderline
avicennia_marina_AM_07769 Alkaloid PMT medium borderline
avicennia_marina_AM_07843 Alkaloid PMT low borderline
avicennia_marina_AM_11514 Alkaloid PMT low borderline
avicennia_marina_AM_13377 Alkaloid PMT medium pass
avicennia_marina_AM_13785 Alkaloid PMT medium borderline
avicennia_marina_AM_14313 Alkaloid PMT medium pass
avicennia_marina_AM_15308 Alkaloid PMT medium pass
avicennia_marina_AM_16283 Alkaloid PMT medium borderline
avicennia_marina_AM_18850 Alkaloid PMT low borderline
avicennia_marina_AM_18851 Alkaloid PMT low borderline
avicennia_marina_AM_19055 Alkaloid PMT medium borderline
avicennia_marina_AM_19477 Alkaloid PMT low borderline
avicennia_marina_AM_19524 Alkaloid PMT medium pass
avicennia_marina_AM_19526 Alkaloid PMT low borderline
avicennia_marina_AM_19527 Alkaloid PMT low borderline
avicennia_marina_AM_19528 Alkaloid PMT low borderline
avicennia_marina_AM_19529 Alkaloid PMT low borderline
avicennia_marina_AM_19768 Alkaloid PMT low borderline
avicennia_marina_AM_19776 Alkaloid PMT medium pass
avicennia_marina_AM_19777 Alkaloid PMT low borderline
avicennia_marina_AM_20235 Alkaloid PMT medium pass
avicennia_marina_AM_20614 Alkaloid PMT low borderline
avicennia_marina_AM_21344 Alkaloid PMT low borderline
avicennia_marina_AM_23482 Alkaloid PMT medium pass
avicennia_marina_AM_23483 Alkaloid PMT medium pass
avicennia_marina_AM_23484 Alkaloid PMT medium pass
avicennia_marina_AM_24424 Alkaloid PMT low borderline
avicennia_marina_AM_24921 Alkaloid PMT medium pass
avicennia_marina_AM_25937 Alkaloid PMT low borderline
avicennia_marina_AM_26667 Alkaloid PMT low borderline
avicennia_marina_AM_27137 Alkaloid PMT medium pass
avicennia_marina_AM_29637 Alkaloid PMT low borderline
avicennia_marina_AM_30219 Alkaloid PMT medium pass
avicennia_marina_AM_31281 Alkaloid PMT medium pass
avicennia_marina_AM_32965 Alkaloid PMT low borderline
avicennia_marina_AM_33872 Alkaloid PMT medium borderline