PlantSME Plant secondary metabolism enzyme database

Avicennia marina (avicennia_marina)

Imported from atlas release summary for Avicennia marina.

1629
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 476 19 BAHD (174) View species results
Alkaloid pathway 359 23 7DLGT (82) View species results
Phenylpropanoid pathway 327 12 POD (122) View species results
Flavonoid pathway 235 13 UFGT (155) View species results
Rosmarinic acid pathway 150 7 C4H (56) View species results
Steroid pathway 82 11 CAS (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1428 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 317 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Gene Pathway Family Confidence Status Best Target
avicennia_marina_AM_00345 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
avicennia_marina_AM_00439 Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
avicennia_marina_AM_00674 Phenylpropanoid 4CL low borderline 4CL__00011__sp_Q6ZAC1_4CL5_ORYSJ
avicennia_marina_AM_00811 Phenylpropanoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
avicennia_marina_AM_00868 Phenylpropanoid 4CL low borderline 4CL__00017__sp_Q9S725_4CL2_ARATH
avicennia_marina_AM_01815 Phenylpropanoid 4CL low borderline 4CL__00008__sp_Q42982_4CL2_ORYSJ
avicennia_marina_AM_02532 Phenylpropanoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
avicennia_marina_AM_02826 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
avicennia_marina_AM_02866 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
avicennia_marina_AM_05392 Phenylpropanoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
avicennia_marina_AM_05593 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
avicennia_marina_AM_06181 Phenylpropanoid 4CL medium pass 4CL__00017__sp_Q9S725_4CL2_ARATH
avicennia_marina_AM_06523 Phenylpropanoid 4CL low borderline 4CL__00004__sp_O24146_4CL2_TOBAC
avicennia_marina_AM_06672 Phenylpropanoid 4CL medium pass 4CL__00018__sp_Q9S777_4CL3_ARATH
avicennia_marina_AM_06725 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
avicennia_marina_AM_07478 Phenylpropanoid 4CL low borderline 4CL__00002__sp_I3PB37_4CL1_PETHY
avicennia_marina_AM_10885 Phenylpropanoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
avicennia_marina_AM_11179 Phenylpropanoid 4CL medium pass 4CL__00014__sp_Q84P24_4CLL6_ARATH
avicennia_marina_AM_11486 Phenylpropanoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
avicennia_marina_AM_13289 Phenylpropanoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
avicennia_marina_AM_13870 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
avicennia_marina_AM_13882 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
avicennia_marina_AM_14214 Phenylpropanoid 4CL medium pass 4CL__00017__sp_Q9S725_4CL2_ARATH
avicennia_marina_AM_15998 Phenylpropanoid 4CL low borderline 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ
avicennia_marina_AM_16359 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
avicennia_marina_AM_17271 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
avicennia_marina_AM_17714 Phenylpropanoid 4CL low borderline 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ
avicennia_marina_AM_19136 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
avicennia_marina_AM_19458 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
avicennia_marina_AM_19518 Phenylpropanoid 4CL medium pass 4CL__00002__sp_I3PB37_4CL1_PETHY
avicennia_marina_AM_19640 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
avicennia_marina_AM_19641 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
avicennia_marina_AM_20006 Phenylpropanoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
avicennia_marina_AM_20073 Phenylpropanoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
avicennia_marina_AM_20074 Phenylpropanoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
avicennia_marina_AM_20325 Phenylpropanoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
avicennia_marina_AM_20423 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
avicennia_marina_AM_20818 Phenylpropanoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
avicennia_marina_AM_21223 Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
avicennia_marina_AM_21329 Phenylpropanoid 4CL medium borderline 4CL__00002__sp_I3PB37_4CL1_PETHY
avicennia_marina_AM_22979 Phenylpropanoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
avicennia_marina_AM_23229 Phenylpropanoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
avicennia_marina_AM_23480 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
avicennia_marina_AM_24009 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
avicennia_marina_AM_24530 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
avicennia_marina_AM_24789 Phenylpropanoid 4CL medium pass 4CL__00003__sp_M4ISH0_CCL1_HUMLU
avicennia_marina_AM_25767 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
avicennia_marina_AM_26335 Phenylpropanoid 4CL medium pass 4CL__00018__sp_Q9S777_4CL3_ARATH
avicennia_marina_AM_26996 Phenylpropanoid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
avicennia_marina_AM_27511 Phenylpropanoid 4CL low borderline 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ