PlantSME Plant secondary metabolism enzyme database

Avicennia marina (avicennia_marina)

Imported from atlas release summary for Avicennia marina.

1629
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 476 19 BAHD (174) View species results
Alkaloid pathway 359 23 7DLGT (82) View species results
Phenylpropanoid pathway 327 12 POD (122) View species results
Flavonoid pathway 235 13 UFGT (155) View species results
Rosmarinic acid pathway 150 7 C4H (56) View species results
Steroid pathway 82 11 CAS (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1428 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 317 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TPS
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Gene Pathway Family Confidence Status Best Target
avicennia_marina_AM_00009 Terpenoid TPS medium pass TPS__00126__sp_J7LH11_TPS8_PHYDL
avicennia_marina_AM_00070 Terpenoid TPS medium pass TPS__00114__sp_G5CV45_TPS32_SOLLC
avicennia_marina_AM_00155 Terpenoid TPS medium pass TPS__00126__sp_J7LH11_TPS8_PHYDL
avicennia_marina_AM_00168 Terpenoid TPS medium pass TPS__00065__sp_C0KWV5_LNOL7_PERFR
avicennia_marina_AM_00184 Terpenoid TPS medium pass TPS__00126__sp_J7LH11_TPS8_PHYDL
avicennia_marina_AM_05334 Terpenoid TPS medium pass TPS__00037__sp_A0A2K9RG07_TPS5_VITAC
avicennia_marina_AM_07955 Terpenoid TPS medium pass TPS__00059__sp_B9RXW0_TPS7_RICCO
avicennia_marina_AM_10307 Terpenoid TPS medium pass TPS__00126__sp_J7LH11_TPS8_PHYDL
avicennia_marina_AM_11938 Terpenoid TPS medium pass TPS__00126__sp_J7LH11_TPS8_PHYDL
avicennia_marina_AM_13940 Terpenoid TPS medium pass TPS__00114__sp_G5CV45_TPS32_SOLLC
avicennia_marina_AM_15199 Terpenoid TPS medium pass TPS__00114__sp_G5CV45_TPS32_SOLLC
avicennia_marina_AM_16895 Terpenoid TPS medium pass TPS__00114__sp_G5CV45_TPS32_SOLLC
avicennia_marina_AM_17962 Terpenoid TPS medium pass TPS__00114__sp_G5CV45_TPS32_SOLLC
avicennia_marina_AM_18649 Terpenoid TPS medium pass TPS__00059__sp_B9RXW0_TPS7_RICCO
avicennia_marina_AM_18650 Terpenoid TPS low borderline TPS__00059__sp_B9RXW0_TPS7_RICCO
avicennia_marina_AM_18651 Terpenoid TPS medium pass TPS__00059__sp_B9RXW0_TPS7_RICCO
avicennia_marina_AM_18742 Terpenoid TPS medium pass TPS__00059__sp_B9RXW0_TPS7_RICCO
avicennia_marina_AM_19678 Terpenoid TPS low borderline TPS__00035__sp_A0A2K9RFZ8_TPS3_VITAC
avicennia_marina_AM_19679 Terpenoid TPS medium pass TPS__00030__sp_A0A1X9IRQ7_CPS1_ISORU
avicennia_marina_AM_19693 Terpenoid TPS medium pass TPS__00114__sp_G5CV45_TPS32_SOLLC
avicennia_marina_AM_23396 Terpenoid TPS low borderline TPS__00028__sp_A0A1W6QDI7_KSL1_ISORU
avicennia_marina_AM_23709 Terpenoid TPS medium pass TPS__00053__sp_A0A7G5KLV3_TPS4_CANOD
avicennia_marina_AM_25157 Terpenoid TPS medium pass TPS__00128__sp_J7LMP2_TPS5_PHYDL
avicennia_marina_AM_26270 Terpenoid TPS medium pass TPS__00037__sp_A0A2K9RG07_TPS5_VITAC
avicennia_marina_AM_27066 Terpenoid TPS medium pass TPS__00049__sp_A0A4Y5QZ62_T19BL_CANSA
avicennia_marina_AM_28060 Terpenoid TPS medium pass TPS__00114__sp_G5CV45_TPS32_SOLLC
avicennia_marina_AM_28546 Terpenoid TPS medium pass TPS__00126__sp_J7LH11_TPS8_PHYDL
avicennia_marina_AM_28810 Terpenoid TPS medium pass TPS__00127__sp_J7LJN5_TPS6_PHYDL
avicennia_marina_AM_29046 Terpenoid TPS medium pass TPS__00047__sp_A0A4Y5QWA6_T18VF_CANSA
avicennia_marina_AM_30541 Terpenoid TPS low borderline TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
avicennia_marina_AM_33988 Terpenoid TPS medium pass TPS__00114__sp_G5CV45_TPS32_SOLLC